Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH10756 | Soybean | cytosol | 48.84 | 36.84 |
| KRH21571 | Soybean | cytosol | 50.0 | 28.29 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 29.07 | 26.88 |
| Bra019871.1-P | Field mustard | mitochondrion | 39.53 | 23.13 |
| CDX97944 | Canola | mitochondrion | 39.53 | 23.13 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 44.19 | 23.03 |
| Zm00001d021779_P001 | Maize | cytosol | 29.07 | 22.73 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 38.37 | 22.45 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 44.19 | 21.47 |
| KRH49947 | Soybean | mitochondrion, plastid | 38.37 | 21.29 |
| KRH41926 | Soybean | plastid | 38.37 | 21.29 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 31.4 | 21.09 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 41.86 | 20.93 |
| PGSC0003DMT400029256 | Potato | plastid | 41.86 | 20.34 |
| Solyc03g006640.2.1 | Tomato | cytosol | 37.21 | 20.13 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 41.86 | 19.46 |
| PGSC0003DMT400012930 | Potato | cytosol | 34.88 | 18.87 |
| CDY15010 | Canola | mitochondrion, nucleus | 38.37 | 18.23 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 34.88 | 18.18 |
| CDY47573 | Canola | cytosol, mitochondrion | 37.21 | 17.78 |
| Bra031435.1-P | Field mustard | cytosol, mitochondrion | 37.21 | 17.78 |
| AT4G05010.1 | Thale cress | nucleus | 33.72 | 17.68 |
| CDY16621 | Canola | nucleus | 34.88 | 17.65 |
| CDY44748 | Canola | nucleus | 34.88 | 17.65 |
| Bra029548.1-P | Field mustard | nucleus | 34.88 | 17.65 |
| TraesCS2B01G232500.1 | Wheat | plastid | 32.56 | 17.07 |
| TraesCS2A01G205100.1 | Wheat | plastid | 32.56 | 17.07 |
| TraesCS2D01G211000.1 | Wheat | plastid | 32.56 | 17.07 |
| HORVU2Hr1G040830.2 | Barley | plastid | 32.56 | 17.07 |
| Bra000811.1-P | Field mustard | nucleus | 33.72 | 16.29 |
| CDY21323 | Canola | nucleus | 33.72 | 16.29 |
| CDX90883 | Canola | nucleus | 33.72 | 16.29 |
| CDY72037 | Canola | mitochondrion | 38.37 | 15.42 |
| KXG36477 | Sorghum | plastid | 30.23 | 15.29 |
| Zm00001d006591_P001 | Maize | plastid | 30.23 | 15.29 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 36.05 | 14.98 |
| Bra013532.1-P | Field mustard | endoplasmic reticulum | 36.05 | 14.98 |
| Os07t0561300-01 | Rice | plastid | 29.07 | 14.88 |
| AT4G21510.1 | Thale cress | cytosol | 38.37 | 14.67 |
| CDY03828 | Canola | mitochondrion | 38.37 | 14.54 |
| CDX82831 | Canola | endoplasmic reticulum | 34.88 | 14.49 |
| KRH49741 | Soybean | mitochondrion | 26.74 | 14.2 |
| Bra038577.1-P | Field mustard | mitochondrion | 19.77 | 10.76 |
| CDY40953 | Canola | extracellular, golgi | 20.93 | 9.68 |
Protein Annotations
| EMBL:ACUP02008359 | EnsemblPlants:KRH21550 | EnsemblPlantsGene:GLYMA_13G244700 | EntrezGene:100794471 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 |
| ProteinID:KRH21550 | ProteinID:KRH21550.1 | UniParc:UPI00023CF9AB | UniProt:A0A0R0GTE4 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr13:+:35406382..35407424
Molecular Weight (calculated)
9624.8 Da
IEP (calculated)
8.225
GRAVY (calculated)
-0.036
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MCSGIISSNS KKCPFEALSR DILVQALCGV DHKDLKQLFH VSKMIREVTM MAKEHFDICT PKTFAFLNPF CSGANGFKEI ETPKVN
001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
Arabidopsis Description
F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.