Factsheet for Solyc10g005480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113740.2.1
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT1G61340.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT1G61340.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT1G61340.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT1G61340.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029256	Potato	plastid	91.53	91.53
Solyc03g006640.2.1	Tomato	cytosol	51.98	57.86
Solyc02g079150.1.1	Tomato	mitochondrion	50.28	53.94
KRH10756	Soybean	cytosol	29.94	46.49
Bra019871.1-P	Field mustard	mitochondrion	36.72	44.22
CDX97944	Canola	mitochondrion	36.72	44.22
KRH21550	Soybean	cytosol	21.47	44.19
KRH21571	Soybean	cytosol	37.85	44.08
CDY19351	Canola	cytosol, mitochondrion, nucleus	35.03	42.18
KRH41926	Soybean	plastid	36.72	41.94
KRH49947	Soybean	mitochondrion, plastid	36.16	41.29
VIT_00s0181g00080.t01	Wine grape	nucleus	39.55	40.7
AT1G61340.1	Thale cress	mitochondrion, nucleus	38.98	37.3
AT4G05010.1	Thale cress	nucleus	33.9	36.59
Bra031435.1-P	Field mustard	cytosol, mitochondrion	36.72	36.11
CDY47573	Canola	cytosol, mitochondrion	36.72	36.11
GSMUA_Achr9P02840_001	Banana	cytosol	33.33	35.76
CDY15010	Canola	mitochondrion, nucleus	35.59	34.81
CDY16621	Canola	nucleus	33.33	34.71
Bra029548.1-P	Field mustard	nucleus	33.33	34.71
Zm00001d021779_P001	Maize	cytosol	21.47	34.55
CDY44748	Canola	nucleus	32.77	34.12
CDX82831	Canola	endoplasmic reticulum	39.55	33.82
Bra000811.1-P	Field mustard	nucleus	33.9	33.71
GSMUA_Achr6P29300_001	Banana	cytosol	24.29	33.59
KXG36477	Sorghum	plastid	32.2	33.53
CDY21323	Canola	nucleus	33.33	33.15
CDX90883	Canola	nucleus	33.33	33.15
KRH49741	Soybean	mitochondrion	29.94	32.72
CDX79068	Canola	endoplasmic reticulum, extracellular	37.85	32.37
Bra013532.1-P	Field mustard	endoplasmic reticulum	37.85	32.37
TraesCS2A01G205100.1	Wheat	plastid	29.38	31.71
TraesCS2D01G211000.1	Wheat	plastid	29.38	31.71
HORVU2Hr1G040830.2	Barley	plastid	29.38	31.71
AT4G21510.1	Thale cress	cytosol	40.11	31.56
CDY72037	Canola	mitochondrion	37.85	31.31
TraesCS2B01G232500.1	Wheat	plastid	28.81	31.1
Os07t0561300-01	Rice	plastid	29.38	30.95
Bra038577.1-P	Field mustard	mitochondrion	26.55	29.75
Zm00001d006591_P001	Maize	plastid	28.25	29.41
CDY03828	Canola	mitochondrion	37.29	29.07
CDY40953	Canola	extracellular, golgi	24.29	23.12

Protein Annotations

EnsemblPlants:Solyc10g005480.2.1	EnsemblPlantsGene:Solyc10g005480.2	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	UniParc:UPI000276C765	UniProt:K4CX80
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:353240..354912

Molecular Weight (calculated)

20378.6 Da

IEP (calculated)

9.383

GRAVY (calculated)

-0.502

Length

177 amino acids

Sequence
(BLAST)

001: MAMGKKICEN VGFGLVRSTS FGRKRVCLPN IRDLDFISTT PTKKICRNNS FSTCVKSPLE ALPQDILIRI VCGVEHEDLK RLFHVSKPIR EATLVAKRWH
101: FEYSTPKKTL GFKNATDMDD WNESNDVELP NAPRQAKFPR TRLSQKKLAD ISVALFTSDS EENWPRRELF MQMDTEL

Best Arabidopsis Sequence Match ( AT4G21510.1 )
(BLAST)

001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT

Arabidopsis Description

SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.