Factsheet for Bra038577.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra007053.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra012650.1-P
Bra013872.1-P
Bra014834.1-P
Bra015801.1-P
Bra018081.1-P
Bra025795.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	Bra012213.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra012214.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra012216.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra025795.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra003735.1-P	AT1G75950.1	21798944
AT1G61340.1	Bra008231.1-P	AT1G75950.1	21798944
AT1G61340.1	Bra015801.1-P	AT1G75950.1	21798944
AT1G61340.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G61340.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G61340.1	Bra007053.1-P	AT3G54190.1	21798944
AT1G61340.1	Bra014834.1-P	AT3G54190.1	21798944
AT1G61340.1	Bra012650.1-P	AT4G17680.1	21798944
AT1G61340.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72037	Canola	mitochondrion	94.94	70.09
Bra031435.1-P	Field mustard	cytosol, mitochondrion	67.09	58.89
AT1G61340.1	Thale cress	mitochondrion, nucleus	62.66	53.51
Bra019871.1-P	Field mustard	mitochondrion	37.97	40.82
Solyc03g006640.2.1	Tomato	cytosol	31.01	30.82
PGSC0003DMT400012930	Potato	cytosol	30.38	30.19
Solyc02g079150.1.1	Tomato	mitochondrion	29.11	27.88
Bra000811.1-P	Field mustard	nucleus	31.01	27.53
Bra029548.1-P	Field mustard	nucleus	29.11	27.06
GSMUA_Achr6P29300_001	Banana	cytosol	21.52	26.56
Solyc10g005480.2.1	Tomato	cytosol, plastid	29.75	26.55
KRH10756	Soybean	cytosol	18.99	26.32
PGSC0003DMT400029256	Potato	plastid	29.11	25.99
PGSC0003DMT400057575	Potato	mitochondrion	15.19	25.81
TraesCS2A01G205100.1	Wheat	plastid	26.58	25.61
GSMUA_Achr9P02840_001	Banana	cytosol	26.58	25.45
KRH49947	Soybean	mitochondrion, plastid	24.68	25.16
TraesCS2B01G232500.1	Wheat	plastid	25.95	25.0
HORVU2Hr1G040830.2	Barley	plastid	25.95	25.0
TraesCS2D01G211000.1	Wheat	plastid	25.32	24.39
KRH21571	Soybean	cytosol	23.42	24.34
KXG36477	Sorghum	plastid	25.95	24.12
Zm00001d006591_P001	Maize	plastid	25.95	24.12
KRH41926	Soybean	plastid	23.42	23.87
Bra013532.1-P	Field mustard	endoplasmic reticulum	31.01	23.67
Zm00001d021779_P001	Maize	cytosol	15.82	22.73
Os07t0561300-01	Rice	plastid	22.78	21.43
KRH49741	Soybean	mitochondrion	20.89	20.37
KRH21550	Soybean	cytosol	10.76	19.77

Protein Annotations

EnsemblPlants:Bra038577.1	EnsemblPlants:Bra038577.1-P	EnsemblPlantsGene:Bra038577	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	SEG:seg
UniParc:UPI000253E547	UniProt:M4FBW1	MapMan:35.1	:	:	:

Description

AT1G61340 (E=8e-022) | F-box family protein

Coordinates

chrScaffold000149:+:188505..189699

Molecular Weight (calculated)

17606.1 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.541

Length

158 amino acids

Sequence
(BLAST)

001: MALGKKRIIV VQKSHLKQRR GVEDGGLGLE LELELVQYKR GFGRKRVLIS SGDKICDSPV RKTSSKKLCD EASAAGGQSR ELEYLPLDIL TLIAKQSHFA
101: YSTPWKTSVF ERSRFGLDKP FGLGDGDDYE IEAPGAPLQK RYRSRDEDDS GVSVALFK

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.