Factsheet for GSMUA_Achr9P02840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT1G61340.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT1G61340.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT1G61340.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT1G61340.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT1G61340.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT1G61340.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT1G61340.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29300_001	Banana	cytosol	43.03	55.47
Zm00001d021779_P001	Maize	cytosol	33.94	50.91
TraesCS2D01G211000.1	Wheat	plastid	39.39	39.63
TraesCS2B01G232500.1	Wheat	plastid	39.39	39.63
HORVU2Hr1G040830.2	Barley	plastid	39.39	39.63
TraesCS2A01G205100.1	Wheat	plastid	38.79	39.02
VIT_00s0181g00080.t01	Wine grape	nucleus	40.61	38.95
Solyc03g006640.2.1	Tomato	cytosol	36.97	38.36
KXG36477	Sorghum	plastid	39.39	38.24
KRH41926	Soybean	plastid	35.76	38.06
KRH49947	Soybean	mitochondrion, plastid	35.76	38.06
PGSC0003DMT400012930	Potato	cytosol	36.36	37.74
KRH21571	Soybean	cytosol	34.55	37.5
Os07t0561300-01	Rice	plastid	37.58	36.9
KRH10756	Soybean	cytosol	25.45	36.84
CDY19351	Canola	cytosol, mitochondrion, nucleus	31.52	35.37
KRH21550	Soybean	cytosol	18.18	34.88
PGSC0003DMT400057575	Potato	mitochondrion	19.39	34.41
CDX97944	Canola	mitochondrion	30.3	34.01
Bra019871.1-P	Field mustard	mitochondrion	30.3	34.01
PGSC0003DMT400029256	Potato	plastid	35.76	33.33
Solyc10g005480.2.1	Tomato	cytosol, plastid	35.76	33.33
Zm00001d006591_P001	Maize	plastid	33.94	32.94
Solyc02g079150.1.1	Tomato	mitochondrion	32.73	32.73
CDY15010	Canola	mitochondrion, nucleus	35.76	32.6
AT1G61340.1	Thale cress	mitochondrion, nucleus	36.36	32.43
CDY47573	Canola	cytosol, mitochondrion	33.94	31.11
Bra031435.1-P	Field mustard	cytosol, mitochondrion	33.94	31.11
AT4G05010.1	Thale cress	nucleus	30.91	31.1
CDY44748	Canola	nucleus	31.52	30.59
CDY16621	Canola	nucleus	31.52	30.59
Bra029548.1-P	Field mustard	nucleus	31.52	30.59
KRH49741	Soybean	mitochondrion	27.27	27.78
Bra000811.1-P	Field mustard	nucleus	29.09	26.97
CDX90883	Canola	nucleus	29.09	26.97
Bra038577.1-P	Field mustard	mitochondrion	25.45	26.58
CDY21323	Canola	nucleus	28.48	26.4
CDY72037	Canola	mitochondrion	33.94	26.17
CDY03828	Canola	mitochondrion	35.15	25.55
AT4G21510.1	Thale cress	cytosol	33.94	24.89
CDX79068	Canola	endoplasmic reticulum, extracellular	30.91	24.64
Bra013532.1-P	Field mustard	endoplasmic reticulum	30.91	24.64
CDX82831	Canola	endoplasmic reticulum	29.09	23.19
CDY40953	Canola	extracellular, golgi	24.85	22.04

Protein Annotations

EnsemblPlants:GSMUA_Achr9P02840_001	EnsemblPlants:GSMUA_Achr9T02840_001	EnsemblPlantsGene:GSMUA_Achr9G02840_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFAM:PF00646
PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI0002961A8D	UniProt:M0TWZ3	MapMan:35.1	:

Description

Putative F-box protein At1g61340 [Source:GMGC_GENE;Acc:GSMUA_Achr9G02840_001]

Coordinates

chr9:-:2002824..2004308

Molecular Weight (calculated)

18494.5 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.296

Length

165 amino acids

Sequence
(BLAST)

001: MAVGKIQHEE SIATGLKFVR STSIMGRKRV VLSRTVDSAN CWHSPKRLSR MSSMERLNRL EALPQDILVK ILCKVDHSDL KQLVLVSKTV NGATLIAKRL
101: HFAFSTPSSK PVFRRHEISD EAPNAPMQQR VAKSRLDGGK VSSVAIALFR SLEDEWPQSQ LDSEM

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.