CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES05709
EES07517
EES18406
KXG19616
KXG38894
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	EES07517	AT3G48150.1	21798944
AT1G61340.1	EES18406	AT3G54190.1	21798944
AT1G61340.1	EES05709	AT4G17680.1	21798944
AT1G61340.1	KXG38894	AT4G17680.1	21798944
AT1G61340.1	EER89430	AT4G25200.1	21798944
AT1G61340.1	EER89431	AT4G25200.1	21798944
AT1G61340.1	KXG19616	AT4G25200.1	21798944
AT1G61340.1	OQU75612	AT4G25200.1	21798944
AT1G61340.1	OQU75930	AT4G25200.1	21798944
AT1G61340.1	OQU76071	AT4G25200.1	21798944
AT1G61340.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021779_P001	Maize	cytosol	48.82	75.45
Zm00001d006591_P001	Maize	plastid	74.71	74.71
TraesCS2A01G205100.1	Wheat	plastid	68.82	71.34
HORVU2Hr1G040830.2	Barley	plastid	68.24	70.73
TraesCS2D01G211000.1	Wheat	plastid	67.65	70.12
TraesCS2B01G232500.1	Wheat	plastid	67.65	70.12
Os07t0561300-01	Rice	plastid	65.29	66.07
GSMUA_Achr6P29300_001	Banana	cytosol	31.76	42.19
KRH41926	Soybean	plastid	37.06	40.65
GSMUA_Achr9P02840_001	Banana	cytosol	38.24	39.39
KRH49947	Soybean	mitochondrion, plastid	35.88	39.35
VIT_00s0181g00080.t01	Wine grape	nucleus	35.29	34.88
KRH21571	Soybean	cytosol	31.18	34.87
Solyc03g006640.2.1	Tomato	cytosol	31.76	33.96
PGSC0003DMT400057575	Potato	mitochondrion	18.24	33.33
KRH10756	Soybean	cytosol	22.35	33.33
PGSC0003DMT400012930	Potato	cytosol	31.18	33.33
Solyc10g005480.2.1	Tomato	cytosol, plastid	33.53	32.2
PGSC0003DMT400029256	Potato	plastid	32.94	31.64
CDY19351	Canola	cytosol, mitochondrion, nucleus	27.06	31.29
CDX97944	Canola	mitochondrion	27.06	31.29
Bra019871.1-P	Field mustard	mitochondrion	27.06	31.29
Solyc02g079150.1.1	Tomato	mitochondrion	30.0	30.91
KRH21550	Soybean	cytosol	15.29	30.23
KRH49741	Soybean	mitochondrion	28.24	29.63
CDY15010	Canola	mitochondrion, nucleus	31.18	29.28
AT4G05010.1	Thale cress	nucleus	27.65	28.66
AT1G61340.1	Thale cress	mitochondrion, nucleus	31.18	28.65
Bra031435.1-P	Field mustard	cytosol, mitochondrion	28.24	26.67
CDY47573	Canola	cytosol, mitochondrion	28.24	26.67
CDY44748	Canola	nucleus	26.47	26.47
Bra038577.1-P	Field mustard	mitochondrion	24.12	25.95
Bra029548.1-P	Field mustard	nucleus	25.88	25.88
CDY16621	Canola	nucleus	25.88	25.88
Bra000811.1-P	Field mustard	nucleus	26.47	25.28
CDY72037	Canola	mitochondrion	31.18	24.77
Bra013532.1-P	Field mustard	endoplasmic reticulum	29.41	24.15
CDX79068	Canola	endoplasmic reticulum, extracellular	29.41	24.15
CDY21323	Canola	nucleus	24.71	23.6
CDX90883	Canola	nucleus	24.71	23.6
CDX82831	Canola	endoplasmic reticulum	28.24	23.19
CDY03828	Canola	mitochondrion	29.41	22.03
AT4G21510.1	Thale cress	cytosol	28.82	21.78
CDY40953	Canola	extracellular, golgi	20.0	18.28

Protein Annotations

EnsemblPlants:KXG36477	EnsemblPlantsGene:SORBI_3002G339000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFAM:PF00646	PFscan:PS50181
ProteinID:EER99544.1	ProteinID:KXG36477	ProteinID:KXG36477.1	RefSeq:XP_002463023.1	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0001A8422F	UniProt:C5XBJ9	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:70611841..70614028

Molecular Weight (calculated)

18798.5 Da

IEP (calculated)

10.977

GRAVY (calculated)

-0.462

Length

170 amino acids

Sequence
(BLAST)

001: MAIGQGDAKK GYLATSLSFS NCRSSTRIFG RKRVAVSPTP GSRSPHSPVR TLRKQRSVRF HMDDAVNLIE SLPQDVLIKI LCKVNHSDLR QLLLVSKPVN
101: EATIVARELH FKFSTPSAKS VFRDEETGDD EDGPGAPKQR RVARSRLRGK NLEGIAVNLS ASFESLRSEV

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.