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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G027080.4
HORVU1Hr1G054930.3
HORVU1Hr1G069210.3
HORVU3Hr1G080560.3
HORVU6Hr1G062870.1
HORVU6Hr1G066640.4
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G61340.1 HORVU0Hr1G027080.4 AT3G48150.1 21798944
AT1G61340.1 HORVU6Hr1G062870.1 AT3G48150.1 21798944
AT1G61340.1 HORVU1Hr1G069210.3 AT3G54190.1 21798944
AT1G61340.1 HORVU3Hr1G080560.3 AT3G54190.1 21798944
AT1G61340.1 HORVU1Hr1G054930.3 AT4G17680.1 21798944
AT1G61340.1 HORVU6Hr1G066640.4 AT4G17680.1 21798944
AT1G61340.1 HORVU6Hr1G077710.3 AT4G25200.1 21798944
AT1G61340.1 HORVU7Hr1G036470.3 AT4G25200.1 21798944
AT1G61340.1 HORVU7Hr1G036500.7 AT4G25200.1 21798944
AT1G61340.1 HORVU7Hr1G036540.3 AT4G25200.1 21798944
AT1G61340.1 HORVU7Hr1G036570.2 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G211000.1 Wheat plastid 98.17 98.17
TraesCS2B01G232500.1 Wheat plastid 98.17 98.17
TraesCS2A01G205100.1 Wheat plastid 97.56 97.56
Os07t0561300-01 Rice plastid 70.73 69.05
KXG36477 Sorghum plastid 70.73 68.24
Zm00001d021779_P001 Maize cytosol 39.63 59.09
Zm00001d006591_P001 Maize plastid 58.54 56.47
GSMUA_Achr6P29300_001 Banana cytosol 31.71 40.62
GSMUA_Achr9P02840_001 Banana cytosol 39.63 39.39
KRH41926 Soybean plastid 37.2 39.35
KRH49947 Soybean mitochondrion, plastid 35.98 38.06
KRH21571 Soybean cytosol 32.93 35.53
Solyc03g006640.2.1 Tomato cytosol 32.32 33.33
VIT_00s0181g00080.t01 Wine grape nucleus 34.76 33.14
KRH21550 Soybean cytosol 17.07 32.56
PGSC0003DMT400012930 Potato cytosol 31.1 32.08
Solyc02g079150.1.1 Tomato mitochondrion 31.1 30.91
KRH10756 Soybean cytosol 21.34 30.7
KRH49741 Soybean mitochondrion 29.88 30.25
PGSC0003DMT400057575 Potato mitochondrion 17.07 30.11
CDX97944 Canola mitochondrion 26.83 29.93
Bra019871.1-P Field mustard mitochondrion 26.83 29.93
Solyc10g005480.2.1 Tomato cytosol, plastid 31.71 29.38
CDY19351 Canola cytosol, mitochondrion, nucleus 26.22 29.25
PGSC0003DMT400029256 Potato plastid 31.1 28.81
CDY15010 Canola mitochondrion, nucleus 31.71 28.73
AT1G61340.1 Thale cress mitochondrion, nucleus 32.32 28.65
AT4G05010.1 Thale cress nucleus 27.44 27.44
CDY47573 Canola cytosol, mitochondrion 29.88 27.22
Bra031435.1-P Field mustard cytosol, mitochondrion 29.88 27.22
Bra038577.1-P Field mustard mitochondrion 25.0 25.95
CDY44748 Canola nucleus 26.83 25.88
Bra013532.1-P Field mustard endoplasmic reticulum 31.71 25.12
CDX79068 Canola endoplasmic reticulum, extracellular 31.71 25.12
Bra029548.1-P Field mustard nucleus 25.61 24.71
CDY16621 Canola nucleus 25.61 24.71
CDY72037 Canola mitochondrion 31.71 24.3
CDX90883 Canola nucleus 26.22 24.16
Bra000811.1-P Field mustard nucleus 26.22 24.16
CDX82831 Canola endoplasmic reticulum 30.49 24.15
CDY21323 Canola nucleus 25.61 23.6
AT4G21510.1 Thale cress cytosol 32.32 23.56
CDY03828 Canola mitochondrion 30.49 22.03
CDY40953 Canola extracellular, golgi 19.51 17.2
Protein Annotations
EnsemblPlants:HORVU2Hr1G040830.2EnsemblPlantsGene:HORVU2Hr1G040830GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:F-box_dom
InterPro:IPR001810PANTHER:PTHR34049PANTHER:PTHR34049:SF1PFscan:PS50181SEG:segUniParc:UPI000296581D
UniProt:M0VVQ5MapMan:35.2::::
Description
No Description!
Coordinates
chrchr2H:-:198408350..198410660
Molecular Weight (calculated)
17500.1 Da
IEP (calculated)
10.484
GRAVY (calculated)
-0.141
Length
164 amino acids
Sequence
(BLAST)
001: MAIGQTMPKG SLATSLSFPS SGSTRILGRK RVAVSPAPSP SGPHSPVRTL RKQRSIRFHM DDTICLLESL PQDVLVKVLC KVNHSDLRQL LLVSKPVSEA
101: TVVAKELHFA FATPSKASAD GEEEDDGPGA PKQHRVARSR CRGVNLASVA VNLSASFSSL MSEV
Best Arabidopsis Sequence Match ( AT4G21510.1 )
(BLAST)
001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
Arabidopsis Description
SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.