CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019871.1-P	Field mustard	mitochondrion	99.32	99.32
CDY19351	Canola	cytosol, mitochondrion, nucleus	91.16	91.16
CDY47573	Canola	cytosol, mitochondrion	51.7	42.22
KRH21550	Soybean	cytosol	23.13	39.53
KRH10756	Soybean	cytosol	30.61	39.47
CDY15010	Canola	mitochondrion, nucleus	47.62	38.67
Solyc02g079150.1.1	Tomato	mitochondrion	42.86	38.18
CDY72037	Canola	mitochondrion	55.1	37.85
PGSC0003DMT400057575	Potato	mitochondrion	23.81	37.63
Solyc10g005480.2.1	Tomato	cytosol, plastid	44.22	36.72
PGSC0003DMT400029256	Potato	plastid	43.54	36.16
PGSC0003DMT400012930	Potato	cytosol	38.78	35.85
KRH49947	Soybean	mitochondrion, plastid	37.41	35.48
KRH41926	Soybean	plastid	36.73	34.84
CDY16621	Canola	nucleus	40.14	34.71
KRH21571	Soybean	cytosol	35.37	34.21
Solyc03g006640.2.1	Tomato	cytosol	36.73	33.96
CDY03828	Canola	mitochondrion	52.38	33.92
CDY44748	Canola	nucleus	38.78	33.53
CDY21323	Canola	nucleus	36.73	30.34
CDX90883	Canola	nucleus	36.73	30.34
GSMUA_Achr9P02840_001	Banana	cytosol	34.01	30.3
Zm00001d021779_P001	Maize	cytosol	22.45	30.0
GSMUA_Achr6P29300_001	Banana	cytosol	25.85	29.69
KXG36477	Sorghum	plastid	31.29	27.06
CDX82831	Canola	endoplasmic reticulum	38.1	27.05
CDX79068	Canola	endoplasmic reticulum, extracellular	38.1	27.05
HORVU2Hr1G040830.2	Barley	plastid	29.93	26.83
TraesCS2B01G232500.1	Wheat	plastid	29.93	26.83
TraesCS2D01G211000.1	Wheat	plastid	29.93	26.83
Os07t0561300-01	Rice	plastid	30.61	26.79
KRH49741	Soybean	mitochondrion	29.25	26.54
TraesCS2A01G205100.1	Wheat	plastid	29.25	26.22
CDY40953	Canola	extracellular, golgi	32.65	25.81
Zm00001d006591_P001	Maize	plastid	27.21	23.53

Protein Annotations

EnsemblPlants:CDX97944	EnsemblPlantsGene:GSBRNA2T00105292001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box_dom
InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181	ProteinID:CDX97944	ProteinID:CDX97944.1
SEG:seg	UniParc:UPI0004EDDDC0	MapMan:35.1	:	:	:

Description

BnaA06g06950D

Coordinates

chrLK031902:+:171728..172534

Molecular Weight (calculated)

16524.5 Da

IEP (calculated)

10.883

GRAVY (calculated)

-0.389

Length

147 amino acids

Sequence
(BLAST)

001: MALRKKGLCA VKSSSNTNRK VVGDGGLGLG LDCDKYKKGF GRKRVLIPIG KNRELESLPQ DILIRIICGV EHGDLKQLFN VSKTIREATL IAKKSHFEYI
101: TPRKTLFFRN KVDHLGNETE VPLKKKTRLS RISCEKKASK ISVALFK

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.