Factsheet for Bra019871.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
peroxisome 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97944	Canola	mitochondrion	99.32	99.32
Bra031435.1-P	Field mustard	cytosol, mitochondrion	51.7	42.22
KRH21550	Soybean	cytosol	23.13	39.53
KRH10756	Soybean	cytosol	30.61	39.47
Solyc02g079150.1.1	Tomato	mitochondrion	42.86	38.18
Bra038577.1-P	Field mustard	mitochondrion	40.82	37.97
PGSC0003DMT400057575	Potato	mitochondrion	23.81	37.63
Solyc10g005480.2.1	Tomato	cytosol, plastid	44.22	36.72
PGSC0003DMT400029256	Potato	plastid	43.54	36.16
PGSC0003DMT400012930	Potato	cytosol	38.78	35.85
KRH49947	Soybean	mitochondrion, plastid	37.41	35.48
KRH41926	Soybean	plastid	36.73	34.84
KRH21571	Soybean	cytosol	35.37	34.21
Solyc03g006640.2.1	Tomato	cytosol	36.73	33.96
Bra029548.1-P	Field mustard	nucleus	38.78	33.53
Bra000811.1-P	Field mustard	nucleus	38.78	32.02
GSMUA_Achr9P02840_001	Banana	cytosol	34.01	30.3
Zm00001d021779_P001	Maize	cytosol	22.45	30.0
GSMUA_Achr6P29300_001	Banana	cytosol	25.85	29.69
Bra013532.1-P	Field mustard	endoplasmic reticulum	38.78	27.54
KXG36477	Sorghum	plastid	31.29	27.06
HORVU2Hr1G040830.2	Barley	plastid	29.93	26.83
TraesCS2B01G232500.1	Wheat	plastid	29.93	26.83
TraesCS2D01G211000.1	Wheat	plastid	29.93	26.83
Os07t0561300-01	Rice	plastid	30.61	26.79
KRH49741	Soybean	mitochondrion	29.25	26.54
TraesCS2A01G205100.1	Wheat	plastid	29.25	26.22
Zm00001d006591_P001	Maize	plastid	27.21	23.53

Protein Annotations

EnsemblPlants:Bra019871.1	EnsemblPlants:Bra019871.1-P	EnsemblPlantsGene:Bra019871	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181	SEG:seg
UniParc:UPI000253EB0E	UniProt:M4DTM8	MapMan:35.1	:	:	:

Description

AT1G61340 (E=6e-021) | F-box family protein

Coordinates

chrA06:+:3935098..3935902

Molecular Weight (calculated)

16478.5 Da

IEP (calculated)

10.956

GRAVY (calculated)

-0.409

Length

147 amino acids

Sequence
(BLAST)

001: MALRKKGLGA VKSSSNTNRK VVGDGGLGLG LDCDKYKKGF GRKRVLIPIG KNRELESLPQ DILIRIICGV EHGDLKQLFN VSKTIREATL IAKKSHFEYI
101: TPRKTLFFRN KVDHLGNETE VPLKKKTRLS RISCEKKASK ISVALFK

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.