Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG36477 | Sorghum | plastid | 75.45 | 48.82 |
| Zm00001d006591_P001 | Maize | plastid | 68.18 | 44.12 |
| HORVU2Hr1G040830.2 | Barley | plastid | 59.09 | 39.63 |
| TraesCS2B01G232500.1 | Wheat | plastid | 58.18 | 39.02 |
| TraesCS2A01G205100.1 | Wheat | plastid | 58.18 | 39.02 |
| TraesCS2D01G211000.1 | Wheat | plastid | 57.27 | 38.41 |
| Os07t0561300-01 | Rice | plastid | 57.27 | 37.5 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 42.73 | 36.72 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 50.91 | 33.94 |
| KRH10756 | Soybean | cytosol | 32.73 | 31.58 |
| KRH21550 | Soybean | cytosol | 22.73 | 29.07 |
| KRH49947 | Soybean | mitochondrion, plastid | 40.0 | 28.39 |
| KRH41926 | Soybean | plastid | 40.0 | 28.39 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 40.91 | 26.16 |
| Solyc03g006640.2.1 | Tomato | cytosol | 36.36 | 25.16 |
| KRH21571 | Soybean | cytosol | 34.55 | 25.0 |
| PGSC0003DMT400012930 | Potato | cytosol | 35.45 | 24.53 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 30.91 | 23.13 |
| CDX97944 | Canola | mitochondrion | 30.0 | 22.45 |
| Bra019871.1-P | Field mustard | mitochondrion | 30.0 | 22.45 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 34.55 | 21.47 |
| PGSC0003DMT400029256 | Potato | plastid | 33.64 | 20.9 |
| AT4G05010.1 | Thale cress | nucleus | 30.91 | 20.73 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 33.64 | 20.0 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 30.0 | 20.0 |
| KRH49741 | Soybean | mitochondrion | 29.09 | 19.75 |
| CDY44748 | Canola | nucleus | 30.0 | 19.41 |
| CDY16621 | Canola | nucleus | 30.0 | 19.41 |
| Bra029548.1-P | Field mustard | nucleus | 30.0 | 19.41 |
| CDY15010 | Canola | mitochondrion, nucleus | 31.82 | 19.34 |
| Bra031435.1-P | Field mustard | cytosol, mitochondrion | 30.91 | 18.89 |
| CDY47573 | Canola | cytosol, mitochondrion | 30.91 | 18.89 |
| CDY21323 | Canola | nucleus | 30.0 | 18.54 |
| Bra000811.1-P | Field mustard | nucleus | 30.0 | 18.54 |
| CDX90883 | Canola | nucleus | 29.09 | 17.98 |
| CDY72037 | Canola | mitochondrion | 33.64 | 17.29 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 14.55 | 17.2 |
| CDY03828 | Canola | mitochondrion | 32.73 | 15.86 |
| Bra038577.1-P | Field mustard | mitochondrion | 22.73 | 15.82 |
| CDX82831 | Canola | endoplasmic reticulum | 29.09 | 15.46 |
| Bra013532.1-P | Field mustard | endoplasmic reticulum | 29.09 | 15.46 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 29.09 | 15.46 |
| AT4G21510.1 | Thale cress | cytosol | 28.18 | 13.78 |
| CDY40953 | Canola | extracellular, golgi | 22.73 | 13.44 |
Protein Annotations
| EnsemblPlants:Zm00001d021779_P001 | EnsemblPlants:Zm00001d021779_T001 | EnsemblPlantsGene:Zm00001d021779 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | PFAM:PF00646 |
| PFscan:PS50181 | ProteinID:ONM58419.1 | ProteinID:ONM58420.1 | SUPFAM:SSF81383 | UniParc:UPI000182AF1A | UniProt:A0A096UDW3 |
| MapMan:35.2 | : | : | : | : | : |
Description
F-box protein SKIP27
Coordinates
chr7:-:162880679..162882541
Molecular Weight (calculated)
12282.8 Da
IEP (calculated)
7.440
GRAVY (calculated)
-0.249
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDAVNLLES LPLDVLIKIL CKVNYSDLRH LLLVSKQVKE ATIYARELHF KFSTPSAKPV FRDEEAGGGD DTCPCAPKQH RAAKSRLRGQ NLERIAVNLS
101: ASYESMLPEV
101: ASYESMLPEV
001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
Arabidopsis Description
SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.