Factsheet for Bra013532.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
endoplasmic reticulum 4
plastid 1
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21510.1	Bra003735.1-P	AT1G75950.1	12795696
AT4G21510.1	Bra008231.1-P	AT1G75950.1	12795696
AT4G21510.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79068	Canola	endoplasmic reticulum, extracellular	99.03	99.03
AT4G21510.1	Thale cress	cytosol	53.14	48.89
KRH49947	Soybean	mitochondrion, plastid	30.92	41.29
PGSC0003DMT400057575	Potato	mitochondrion	18.36	40.86
Solyc03g006640.2.1	Tomato	cytosol	30.92	40.25
PGSC0003DMT400012930	Potato	cytosol	30.92	40.25
KRH41926	Soybean	plastid	29.95	40.0
KRH10756	Soybean	cytosol	21.74	39.47
KRH21571	Soybean	cytosol	28.99	39.47
Bra029548.1-P	Field mustard	nucleus	32.37	39.41
Bra019871.1-P	Field mustard	mitochondrion	27.54	38.78
Solyc10g005480.2.1	Tomato	cytosol, plastid	32.37	37.85
VIT_00s0181g00080.t01	Wine grape	nucleus	31.4	37.79
Bra000811.1-P	Field mustard	nucleus	31.88	37.08
PGSC0003DMT400029256	Potato	plastid	31.4	36.72
Solyc02g079150.1.1	Tomato	mitochondrion	28.99	36.36
KRH21550	Soybean	cytosol	14.98	36.05
Bra031435.1-P	Field mustard	cytosol, mitochondrion	30.43	35.0
TraesCS2D01G211000.1	Wheat	plastid	25.6	32.32
Os07t0561300-01	Rice	plastid	26.09	32.14
HORVU2Hr1G040830.2	Barley	plastid	25.12	31.71
TraesCS2A01G205100.1	Wheat	plastid	25.12	31.71
TraesCS2B01G232500.1	Wheat	plastid	25.12	31.71
Bra038577.1-P	Field mustard	mitochondrion	23.67	31.01
GSMUA_Achr9P02840_001	Banana	cytosol	24.64	30.91
KRH49741	Soybean	mitochondrion	24.15	30.86
GSMUA_Achr6P29300_001	Banana	cytosol	18.84	30.47
KXG36477	Sorghum	plastid	24.15	29.41
Zm00001d021779_P001	Maize	cytosol	15.46	29.09
Zm00001d006591_P001	Maize	plastid	20.77	25.29

Protein Annotations

EnsemblPlants:Bra013532.1	EnsemblPlants:Bra013532.1-P	EnsemblPlantsGene:Bra013532	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181	SEG:seg
UniParc:UPI0002546F9D	UniProt:M4DAM2	MapMan:35.1	:	:	:

Description

AT4G21510 (E=3e-055) | F-box family protein

Coordinates

chrA01:-:6169106..6169893

Molecular Weight (calculated)

23439.1 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.338

Length

207 amino acids

Sequence
(BLAST)

001: MIHYLHLIGE FWFCSVAKVA EWFLETIFLR NFLSGGGRTM KSKLDGEEEE LELGLGSVTF TRGLGRKRVL FSSRVGESLL EIPATESTPV KRQRSRTTNV
101: SLSSERSCLE SLPQELLIRV VCGVDHEDLK SLNIVSKSIR EASLIAKELH FSYTTPKKTR ASRNQLAFED SSQQVEDVEP PNAPVRHRWT KAKRKEELSN
201: VSVALFT

Best Arabidopsis Sequence Match ( AT4G21510.1 )
(BLAST)

001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT

Arabidopsis Description

SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.