Factsheet for Bra031435.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra007053.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra012650.1-P
Bra013872.1-P
Bra014834.1-P
Bra015801.1-P
Bra018081.1-P
Bra025795.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	Bra012213.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra012214.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra012216.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra025795.1-P	AT1G20140.1	21798944
AT1G61340.1	Bra003735.1-P	AT1G75950.1	21798944
AT1G61340.1	Bra008231.1-P	AT1G75950.1	21798944
AT1G61340.1	Bra015801.1-P	AT1G75950.1	21798944
AT1G61340.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G61340.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G61340.1	Bra007053.1-P	AT3G54190.1	21798944
AT1G61340.1	Bra014834.1-P	AT3G54190.1	21798944
AT1G61340.1	Bra012650.1-P	AT4G17680.1	21798944
AT1G61340.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47573	Canola	cytosol, mitochondrion	100.0	100.0
CDY03828	Canola	mitochondrion	98.33	77.97
AT1G61340.1	Thale cress	mitochondrion, nucleus	70.56	68.65
Bra038577.1-P	Field mustard	mitochondrion	58.89	67.09
Bra019871.1-P	Field mustard	mitochondrion	42.22	51.7
PGSC0003DMT400012930	Potato	cytosol	36.67	41.51
PGSC0003DMT400057575	Potato	mitochondrion	21.11	40.86
Solyc03g006640.2.1	Tomato	cytosol	35.56	40.25
KRH10756	Soybean	cytosol	24.44	38.6
PGSC0003DMT400029256	Potato	plastid	36.67	37.29
KRH21550	Soybean	cytosol	17.78	37.21
KRH21571	Soybean	cytosol	31.11	36.84
Solyc10g005480.2.1	Tomato	cytosol, plastid	36.11	36.72
GSMUA_Achr6P29300_001	Banana	cytosol	26.11	36.72
Solyc02g079150.1.1	Tomato	mitochondrion	33.33	36.36
Bra000811.1-P	Field mustard	nucleus	34.44	34.83
Bra029548.1-P	Field mustard	nucleus	32.78	34.71
KRH41926	Soybean	plastid	29.44	34.19
KRH49947	Soybean	mitochondrion, plastid	29.44	34.19
GSMUA_Achr9P02840_001	Banana	cytosol	31.11	33.94
Zm00001d021779_P001	Maize	cytosol	18.89	30.91
TraesCS2A01G205100.1	Wheat	plastid	27.78	30.49
Bra013532.1-P	Field mustard	endoplasmic reticulum	35.0	30.43
HORVU2Hr1G040830.2	Barley	plastid	27.22	29.88
TraesCS2B01G232500.1	Wheat	plastid	27.22	29.88
TraesCS2D01G211000.1	Wheat	plastid	26.67	29.27
KXG36477	Sorghum	plastid	26.67	28.24
Zm00001d006591_P001	Maize	plastid	25.56	27.06
Os07t0561300-01	Rice	plastid	23.89	25.6
KRH49741	Soybean	mitochondrion	21.67	24.07

Protein Annotations

EnsemblPlants:Bra031435.1	EnsemblPlants:Bra031435.1-P	EnsemblPlantsGene:Bra031435	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181	SEG:seg
UniParc:UPI0002545035	UniProt:M4ERK9	MapMan:35.1	:	:	:

Description

AT1G61340 (E=2e-064) | F-box family protein

Coordinates

chrA01:+:17476683..17478091

Molecular Weight (calculated)

20197.5 Da

IEP (calculated)

10.343

GRAVY (calculated)

-0.446

Length

180 amino acids

Sequence
(BLAST)

001: MALGKKRIVA QKSNLKQRRG VEEGGLGIEL ELVQYKRGFG RKRVLISETR DSVFTSPVGT ISSKKLCDKT LGTGGQSREL EDLPLDILVK IICGVEHEDL
101: KQLFHVSKTI REATLIAKQS HFAYSTPRKT LIFQLGRYGL DKPFDLGEDK IEAPAAPLQK RYRRINRNED NSGVSVALFN

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.