Factsheet for Bra000811.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90883	Canola	nucleus	83.15	83.15
CDY21323	Canola	nucleus	81.46	81.46
Bra029548.1-P	Field mustard	nucleus	57.87	60.59
AT4G05010.1	Thale cress	nucleus	55.06	59.76
Bra019871.1-P	Field mustard	mitochondrion	32.02	38.78
PGSC0003DMT400057575	Potato	mitochondrion	20.22	38.71
VIT_00s0181g00080.t01	Wine grape	nucleus	37.08	38.37
PGSC0003DMT400012930	Potato	cytosol	33.71	37.74
KRH10756	Soybean	cytosol	24.16	37.72
Solyc03g006640.2.1	Tomato	cytosol	33.15	37.11
PGSC0003DMT400029256	Potato	plastid	34.27	34.46
Bra031435.1-P	Field mustard	cytosol, mitochondrion	34.83	34.44
Solyc10g005480.2.1	Tomato	cytosol, plastid	33.71	33.9
KRH21550	Soybean	cytosol	16.29	33.72
GSMUA_Achr6P29300_001	Banana	cytosol	24.16	33.59
Solyc02g079150.1.1	Tomato	mitochondrion	30.9	33.33
Bra013532.1-P	Field mustard	endoplasmic reticulum	37.08	31.88
KRH21571	Soybean	cytosol	26.97	31.58
Bra038577.1-P	Field mustard	mitochondrion	27.53	31.01
KRH49947	Soybean	mitochondrion, plastid	26.97	30.97
KRH41926	Soybean	plastid	26.4	30.32
Zm00001d021779_P001	Maize	cytosol	18.54	30.0
GSMUA_Achr9P02840_001	Banana	cytosol	26.97	29.09
Os07t0561300-01	Rice	plastid	25.84	27.38
KXG36477	Sorghum	plastid	25.28	26.47
TraesCS2A01G205100.1	Wheat	plastid	24.16	26.22
TraesCS2B01G232500.1	Wheat	plastid	24.16	26.22
TraesCS2D01G211000.1	Wheat	plastid	24.16	26.22
HORVU2Hr1G040830.2	Barley	plastid	24.16	26.22
Zm00001d006591_P001	Maize	plastid	23.03	24.12
KRH49741	Soybean	mitochondrion	21.91	24.07

Protein Annotations

EnsemblPlants:Bra000811.1	EnsemblPlants:Bra000811.1-P	EnsemblPlantsGene:Bra000811	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFAM:PF00646
PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	UniParc:UPI00025404B8	UniProt:M4C9D2	MapMan:35.1

Description

AT4G05010 (E=7e-047) | F-box family protein

Coordinates

chrA03:+:13297113..13297812

Molecular Weight (calculated)

20359.4 Da

IEP (calculated)

10.260

GRAVY (calculated)

-0.634

Length

178 amino acids

Sequence
(BLAST)

001: MALPNGEFEI SFSHGKLHGS DEEVVRLGFV RFTRGLRSKR ILFSKSNHET VSNSDLLDSP PVKMPLKRSK TEPNSSVLES LHQDILIRIL CHVDHDDLKR
101: LKRVSKTIRN AVLEAKKSHF DYSTPRKTLP FRDPTSILEQ DSSLSDQDDA MEPPNAPVRR RKINREADLS KISMVLFK

Best Arabidopsis Sequence Match ( AT4G05010.1 )
(BLAST)

001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK

Arabidopsis Description

F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.