Factsheet for Bra029548.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44748	Canola	nucleus	97.06	97.06
AT4G05010.1	Thale cress	nucleus	64.71	67.07
Bra000811.1-P	Field mustard	nucleus	60.59	57.87
VIT_00s0181g00080.t01	Wine grape	nucleus	41.18	40.7
PGSC0003DMT400057575	Potato	mitochondrion	21.76	39.78
KRH10756	Soybean	cytosol	26.47	39.47
Bra019871.1-P	Field mustard	mitochondrion	33.53	38.78
KRH49947	Soybean	mitochondrion, plastid	35.29	38.71
KRH41926	Soybean	plastid	35.29	38.71
Solyc03g006640.2.1	Tomato	cytosol	35.29	37.74
KRH21571	Soybean	cytosol	32.94	36.84
PGSC0003DMT400012930	Potato	cytosol	33.53	35.85
Solyc02g079150.1.1	Tomato	mitochondrion	34.71	35.76
KRH21550	Soybean	cytosol	17.65	34.88
PGSC0003DMT400029256	Potato	plastid	35.29	33.9
Solyc10g005480.2.1	Tomato	cytosol, plastid	34.71	33.33
Bra031435.1-P	Field mustard	cytosol, mitochondrion	34.71	32.78
Bra013532.1-P	Field mustard	endoplasmic reticulum	39.41	32.37
GSMUA_Achr9P02840_001	Banana	cytosol	30.59	31.52
Zm00001d021779_P001	Maize	cytosol	19.41	30.0
Bra038577.1-P	Field mustard	mitochondrion	27.06	29.11
GSMUA_Achr6P29300_001	Banana	cytosol	21.76	28.91
Os07t0561300-01	Rice	plastid	27.06	27.38
KRH49741	Soybean	mitochondrion	25.29	26.54
KXG36477	Sorghum	plastid	25.88	25.88
TraesCS2A01G205100.1	Wheat	plastid	24.71	25.61
TraesCS2B01G232500.1	Wheat	plastid	24.71	25.61
TraesCS2D01G211000.1	Wheat	plastid	24.71	25.61
HORVU2Hr1G040830.2	Barley	plastid	24.71	25.61
Zm00001d006591_P001	Maize	plastid	22.35	22.35

Protein Annotations

EnsemblPlants:Bra029548.1	EnsemblPlants:Bra029548.1-P	EnsemblPlantsGene:Bra029548	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFAM:PF00646
PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000254261D	UniProt:M4EL81	MapMan:35.1

Description

AT4G05010 (E=2e-049) | F-box family protein

Coordinates

chrA09:-:17140967..17141642

Molecular Weight (calculated)

19217.6 Da

IEP (calculated)

10.261

GRAVY (calculated)

-0.781

Length

170 amino acids

Sequence
(BLAST)

001: MAFSNRGFSK FHGKEEASGL GFVRITRGLG RKRILISKSN QENVSNSDQN LLKRSKSETT ESNSSVLESL HQDILIRVLC HVDHDDLARL KRVSKTIRNA
101: VLEAKKSHFD YSTPKKTLSF RDPLVTLNED SNSNSTSDQD DEIEPPNAPT RRKNVSRESD LSKISMVLFK

Best Arabidopsis Sequence Match ( AT4G05010.1 )
(BLAST)

001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK

Arabidopsis Description

F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.