Factsheet for PGSC0003DMT400029256

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400012249
PGSC0003DMT400052841
PGSC0003DMT400063189
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT1G61340.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT1G61340.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT1G61340.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT1G61340.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005480.2.1	Tomato	cytosol, plastid	91.53	91.53
PGSC0003DMT400057575	Potato	mitochondrion	31.07	59.14
PGSC0003DMT400012930	Potato	cytosol	53.11	59.12
Bra019871.1-P	Field mustard	mitochondrion	36.16	43.54
CDX97944	Canola	mitochondrion	36.16	43.54
KRH10756	Soybean	cytosol	27.68	42.98
KRH21571	Soybean	cytosol	36.72	42.76
KRH41926	Soybean	plastid	37.29	42.58
CDY19351	Canola	cytosol, mitochondrion, nucleus	35.03	42.18
KRH49947	Soybean	mitochondrion, plastid	36.72	41.94
VIT_00s0181g00080.t01	Wine grape	nucleus	40.68	41.86
KRH21550	Soybean	cytosol	20.34	41.86
AT1G61340.1	Thale cress	mitochondrion, nucleus	38.42	36.76
Bra031435.1-P	Field mustard	cytosol, mitochondrion	37.29	36.67
CDY47573	Canola	cytosol, mitochondrion	37.29	36.67
GSMUA_Achr6P29300_001	Banana	cytosol	25.99	35.94
GSMUA_Achr9P02840_001	Banana	cytosol	33.33	35.76
Bra029548.1-P	Field mustard	nucleus	33.9	35.29
CDY16621	Canola	nucleus	33.9	35.29
AT4G05010.1	Thale cress	nucleus	32.2	34.76
CDY44748	Canola	nucleus	33.33	34.71
Bra000811.1-P	Field mustard	nucleus	34.46	34.27
CDY15010	Canola	mitochondrion, nucleus	35.03	34.25
CDX90883	Canola	nucleus	33.9	33.71
CDY21323	Canola	nucleus	33.9	33.71
Zm00001d021779_P001	Maize	cytosol	20.9	33.64
KRH49741	Soybean	mitochondrion	30.51	33.33
KXG36477	Sorghum	plastid	31.64	32.94
CDX82831	Canola	endoplasmic reticulum	38.42	32.85
CDX79068	Canola	endoplasmic reticulum, extracellular	36.72	31.4
Bra013532.1-P	Field mustard	endoplasmic reticulum	36.72	31.4
HORVU2Hr1G040830.2	Barley	plastid	28.81	31.1
TraesCS2A01G205100.1	Wheat	plastid	28.81	31.1
TraesCS2D01G211000.1	Wheat	plastid	28.81	31.1
Os07t0561300-01	Rice	plastid	29.38	30.95
CDY72037	Canola	mitochondrion	37.29	30.84
AT4G21510.1	Thale cress	cytosol	38.98	30.67
TraesCS2B01G232500.1	Wheat	plastid	28.25	30.49
CDY03828	Canola	mitochondrion	37.85	29.52
Bra038577.1-P	Field mustard	mitochondrion	25.99	29.11
Zm00001d006591_P001	Maize	plastid	27.12	28.24
CDY40953	Canola	extracellular, golgi	23.16	22.04

Protein Annotations

EnsemblPlants:PGSC0003DMT400029256	EnsemblPlantsGene:PGSC0003DMG400011249	EntrezGene:102590788	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PGSC:PGSC0003DMG400011249
RefSeq:XP_006352592.1	RefSeq:XP_006352593.1	UniParc:UPI00029604CF	UniProt:M1ASH5	MapMan:35.1	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011249]

Coordinates

chr10:-:541578..543271

Molecular Weight (calculated)

20290.5 Da

IEP (calculated)

10.117

GRAVY (calculated)

-0.458

Length

177 amino acids

Sequence
(BLAST)

001: MAMGKKICEN VGFGLVRSTS FGRKRVCLPN IRDLDFISTT PTKKICRKNS FSTCVKSPLE ALPQDILIRI VCGVEHDDLK RLFHVSKPIR EATLVAKRWH
101: FEYSTPTKTL GFKNATDIDN WSESNNVEVP NAPRQSKFPR ARLSRKKLAD ISVALFTSDS EENWPRRELF MQMDTEV

Best Arabidopsis Sequence Match ( AT4G21510.1 )
(BLAST)

001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT

Arabidopsis Description

SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.