Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82831 | Canola | endoplasmic reticulum | 50.22 | 54.59 |
| Bra013532.1-P | Field mustard | endoplasmic reticulum | 48.89 | 53.14 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 48.89 | 53.14 |
| AT4G05010.1 | Thale cress | nucleus | 33.33 | 45.73 |
| PGSC0003DMT400012930 | Potato | cytosol | 30.22 | 42.77 |
| KRH10756 | Soybean | cytosol | 20.89 | 41.23 |
| Solyc03g006640.2.1 | Tomato | cytosol | 28.89 | 40.88 |
| KRH21571 | Soybean | cytosol | 27.56 | 40.79 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 31.11 | 40.7 |
| KRH41926 | Soybean | plastid | 28.0 | 40.65 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 31.56 | 40.11 |
| KRH49947 | Soybean | mitochondrion, plastid | 27.56 | 40.0 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 16.44 | 39.78 |
| PGSC0003DMT400029256 | Potato | plastid | 30.67 | 38.98 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 32.0 | 38.92 |
| KRH21550 | Soybean | cytosol | 14.67 | 38.37 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 27.56 | 37.58 |
| KRH49741 | Soybean | mitochondrion | 24.44 | 33.95 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 24.89 | 33.94 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 19.11 | 33.59 |
| Os07t0561300-01 | Rice | plastid | 24.89 | 33.33 |
| HORVU2Hr1G040830.2 | Barley | plastid | 23.56 | 32.32 |
| TraesCS2D01G211000.1 | Wheat | plastid | 23.56 | 32.32 |
| TraesCS2B01G232500.1 | Wheat | plastid | 23.56 | 32.32 |
| TraesCS2A01G205100.1 | Wheat | plastid | 23.56 | 32.32 |
| KXG36477 | Sorghum | plastid | 21.78 | 28.82 |
| Zm00001d021779_P001 | Maize | cytosol | 13.78 | 28.18 |
| Zm00001d006591_P001 | Maize | plastid | 19.56 | 25.88 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828236 | ProteinID:AEE84461.1 | ArrayExpress:AT4G21510 | EnsemblPlantsGene:AT4G21510 | RefSeq:AT4G21510 |
| TAIR:AT4G21510 | RefSeq:AT4G21510-TAIR-G | EnsemblPlants:AT4G21510.1 | TAIR:AT4G21510.1 | EMBL:BT029383 | ProteinID:CAA18715.1 |
| ProteinID:CAB81258.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001810 | RefSeq:NP_567629.1 |
| UniProt:O65416 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50181 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | SUPFAM:SSF81383 | UniParc:UPI0000162AEB | SEG:seg |
Description
SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
Coordinates
chr4:-:11445849..11447429
Molecular Weight (calculated)
25570.8 Da
IEP (calculated)
10.214
GRAVY (calculated)
-0.338
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.