CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17030.1	CDX68112	AT1G75950.1	12795696
AT2G17030.1	CDX73212	AT1G75950.1	12795696
AT2G17030.1	CDX80590	AT1G75950.1	12795696
AT2G17030.1	CDX85931	AT1G75950.1	12795696
AT2G17030.1	CDX87650	AT1G75950.1	12795696
AT2G17030.1	CDY13521	AT1G75950.1	12795696
AT2G17030.1	CDY39073	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G17030.1	Thale cress	cytosol	80.59	80.59
AT2G17036.1	Thale cress	cytosol	53.32	53.71
KRH32947	Soybean	endoplasmic reticulum, vacuole	30.71	47.17
VIT_03s0038g03630.t01	Wine grape	cytosol, plastid	31.45	43.24
Solyc01g111920.2.1	Tomato	cytosol	40.05	40.15
PGSC0003DMT400047938	Potato	cytosol	40.05	39.85
VIT_03s0038g02910.t01	Wine grape	golgi	33.17	36.0
VIT_03s0038g02890.t01	Wine grape	cytosol	34.89	30.8
CDX88737	Canola	cytosol	25.31	28.07
CDX71060	Canola	cytosol	24.82	27.6
CDY64038	Canola	cytosol	18.67	21.97
CDY41638	Canola	cytosol	17.44	20.23

Protein Annotations

EnsemblPlants:CDY67092	EnsemblPlantsGene:GSBRNA2T00058805001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710	PANTHER:PTHR13710:SF83	PFAM:PF03478
ProteinID:CDY67092	ProteinID:CDY67092.1	SEG:seg	SMART:SM00256	UniParc:UPI0004EEA176	UniProt:A0A078JNY5
MapMan:35.1	:	:	:	:	:

Description

BnaCnng53470DBnaCnng53470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNY5]

Coordinates

chrLK035746:-:906..2712

Molecular Weight (calculated)

45867.7 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.152

Length

407 amino acids

Sequence
(BLAST)

001: MVDWATLPKD LLNLISKSLD SSFDLLQFRS VCSSWRSSAE AKPPLPTHHL PILPDNGTSL FPDSAVGFRL SQRSILLVKP HKPPINGSDL FGWLVKVEED
101: LNAPRGKVTL LDPMSETIHS LPEHFPRSLD MSEFKIRELG REFKLHYFNT VGDIINSLYL EKAVVRYLDS CSKFVLLTIH VSGKLAVFTS WDRAWTVIND
201: MPSPYDDVIV FDGRFFGVDN NGRTVVVDFA DLKLELVASP VYGGDKKFLI ESCGEMLMVD MYLSMEEVDG DPGFGEEVFE HHAVFMNERT VKFKVFKFVE
301: GEKSWVEVKD LGGKMLFLGD DCNFTASASD LLPSCGGSCV FFNGNVFNED NVDAMQDRDL GVFDFRSGKI ELVHKLPEYA KLFWPPPPWI TSRERAEDHP
401: GETSSQS

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.