CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010521.1-P	Field mustard	cytosol	99.13	96.35
CDY41638	Canola	cytosol	90.75	89.46
AT4G35733.1	Thale cress	cytosol	58.96	56.98
KRH69707	Soybean	cytosol	27.75	25.33
PGSC0003DMT400015524	Potato	cytosol	12.14	23.46
KRH07955	Soybean	plastid	12.72	20.56
PGSC0003DMT400015519	Potato	cytosol	22.54	18.89
PGSC0003DMT400015466	Potato	cytosol	23.41	18.75
CDY67092	Canola	cytosol	21.97	18.67
PGSC0003DMT400015444	Potato	cytosol	12.14	18.58
CDX71060	Canola	cytosol	19.65	18.58
Solyc11g005160.1.1	Tomato	nucleus	22.83	18.37
PGSC0003DMT400015516	Potato	cytosol	14.45	18.12
CDX88737	Canola	cytosol	18.79	17.71
PGSC0003DMT400015473	Potato	cytosol	20.52	16.78
Solyc02g083170.2.1	Tomato	nucleus	22.83	16.26
PGSC0003DMT400003919	Potato	cytosol	22.54	16.15
PGSC0003DMT400015469	Potato	cytosol	17.05	13.29

Protein Annotations

EnsemblPlants:CDY64038	EnsemblPlantsGene:GSBRNA2T00040823001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF295
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86	PFAM:PF03478
ProteinID:CDY64038	ProteinID:CDY64038.1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EE8774	UniProt:A0A078JF50
MapMan:35.1	:	:	:	:	:

Description

BnaA08g31030DBnaA08g31030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JF50]

Coordinates

chrLK034391:+:1420..2490

Molecular Weight (calculated)

40379.5 Da

IEP (calculated)

7.625

GRAVY (calculated)

-0.200

Length

346 amino acids

Sequence
(BLAST)

001: MSKSVEWSGL PEELVDEIAG RLFSKVELHR VRSICKPWRS ASSIHKRYPK RHDRNRVRVL SPLSNINSCL LSPAAFFRVF LSSCRNKGWL IKTQDVSETR
101: KKLLHPLSRV PMDSSQQTLD LLEYTVTEIH QSYDVTKSIS YNFARVVLMD KFVFGVNDKK EIWCNNVWTR VSDEEAEYFS DIIVHKGQIY ALDLNSAIWW
201: ISLSELKIFQ YGPSTPMDYY EFDDCKDKRL VEFCGELCII HRFCKTFRVR RVNVERTIGF KVYKMDMELV EWVEVKSLGD NAFVMATDSC FSVVASDYYG
301: CLEDAIYFTE KKDVNNVSVF KLGQGCVTKL VESFENCFHM FYPPFV

Best Arabidopsis Sequence Match ( AT4G35733.1 )
(BLAST)

001: MSEATVWSDL PGELLDHIAN GLFSKVELLR FRSICKTFRS AVDSDKNFLD HLKRNRRRLL SPYSTGKTCS LSPAAFYRVV LSSYPDKGWL IKLQDAYVSS
101: QKQLLSPLSR FSIKSSGKTL DLLEFTVSEI HQSYDVEYLY YNSTRASFNF ARVVLAEDFV FIVDNYKKIW LCNSNESDSH WVRIMDEEVK LFSDIVFHKG
201: YMYALDLTGA VWWISLSEFG IFQFGPSSTP MDYCDIDECK DKRFVEYCGD LCIVHRFSRK FRIKRVDIDM TVGFKVYKMD EELVEYVEVK SLGDKAFVMA
301: TDSCFSVLAR EYYGCLENSI YFTEQNNVKV FKLGDGSITN MVDSSFQSCF QMLIPPLV

Arabidopsis Description

F-box protein At4g35733 [Source:UniProtKB/Swiss-Prot;Acc:B3H6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.