Factsheet for PGSC0003DMT400015469

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015516	Potato	cytosol	47.75	76.81
PGSC0003DMT400015444	Potato	cytosol	38.96	76.55
PGSC0003DMT400015524	Potato	cytosol	26.58	65.92
PGSC0003DMT400015473	Potato	cytosol	44.14	46.34
PGSC0003DMT400015519	Potato	cytosol	41.22	44.31
PGSC0003DMT400015466	Potato	cytosol	41.89	43.06
PGSC0003DMT400003919	Potato	cytosol	29.28	26.92
KRH69707	Soybean	cytosol	16.67	19.53
AT1G65770.1	Thale cress	plastid	14.41	17.78
PGSC0003DMT400047938	Potato	cytosol	16.22	17.6
AT1G57906.1	Thale cress	cytosol	9.01	17.54
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	14.19	17.4
CDY64038	Canola	cytosol	13.29	17.05
AT4G35733.1	Thale cress	cytosol	13.74	17.04
Bra010521.1-P	Field mustard	cytosol	13.51	16.85
CDY41638	Canola	cytosol	13.29	16.81
AT1G44080.1	Thale cress	nucleus	13.06	16.71
AT2G26160.1	Thale cress	cytosol	12.39	16.62
AT3G25750.2	Thale cress	cytosol	13.06	16.02
AT1G65740.1	Thale cress	cytosol	12.84	15.36
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	13.06	13.78
KRH07955	Soybean	plastid	4.5	9.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400015469	EnsemblPlantsGene:PGSC0003DMG400006039	InterPro:DUF295	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86	PFAM:PF03478
PGSC:PGSC0003DMG400006039	SEG:seg	UniParc:UPI000296FB7C	UniProt:M1A632	MapMan:35.1	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006039]

Coordinates

chr11:-:7934680..7937185

Molecular Weight (calculated)

50133.0 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.298

Length

444 amino acids

Sequence
(BLAST)

001: MGISIRDQLF CLKSGGENWT TLKDPSKVVD IIVYKGNFYA VDIYGGTIKY DPSSFNETNV SSSIKMLSSS LFKRWGSKKR LVESGGKLFL VDMFLDTDVK
101: TELHGSQPSW KCPKEIKLYR LDEEQHEWIA VHTLGDQIFY AGDACCFSVS SLNFGDQCRG NCIYYENGGI IVDILGELPP KYYDDDFEDD CVCGGDDKWT
201: TLKDPTSKIV DISVYKGNFY VVDTYGETIM YDPSSFNKTN VSSNVKGLSS SIFNGWGSKK RLVESGAKLY LVDMFLDTDV KAEVHGSQPS WNCPKEIKVY
301: RLDEEQHEWI AVHTLGDQIF FAGDDCCFSV SSSDFGDQCR GNCIYYVNGG ITVNMRISPP KYYAYGFEDY LVCGLSKEVK LRYKGLHGHH TGIFSLQDGK
401: LGSLLSFLEY ADIFWPPPSW LFTDDDQAAS KKFSHFVIDD RHVV

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.