Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G44080.1 | Thale cress | nucleus | 52.87 | 50.43 |
| AT3G25750.2 | Thale cress | cytosol | 53.47 | 48.9 |
| AT1G65735.1 | Thale cress | cytosol | 8.16 | 42.19 |
| AT4G35733.1 | Thale cress | cytosol | 40.79 | 37.71 |
| AT1G65770.1 | Thale cress | plastid | 34.74 | 31.94 |
| AT1G65740.1 | Thale cress | cytosol | 33.53 | 29.92 |
| AT1G65760.1 | Thale cress | cytosol, golgi, plasma membrane | 31.72 | 29.01 |
| AT2G17690.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 35.05 | 27.55 |
| AT1G57906.1 | Thale cress | cytosol | 18.43 | 26.75 |
| KRH69707 | Soybean | cytosol | 29.91 | 26.12 |
| KRH07955 | Soybean | plastid | 16.31 | 25.23 |
| AT2G17030.1 | Thale cress | cytosol | 25.68 | 20.88 |
| AT5G60060.1 | Thale cress | cytosol | 21.15 | 18.72 |
| PGSC0003DMT400015519 | Potato | cytosol | 22.36 | 17.92 |
| AT2G17036.1 | Thale cress | cytosol | 21.45 | 17.57 |
| PGSC0003DMT400015466 | Potato | cytosol | 22.66 | 17.36 |
| PGSC0003DMT400015524 | Potato | cytosol | 9.37 | 17.32 |
| PGSC0003DMT400015473 | Potato | cytosol | 22.05 | 17.26 |
| PGSC0003DMT400003919 | Potato | cytosol | 24.47 | 16.77 |
| Solyc02g083170.2.1 | Tomato | nucleus | 24.47 | 16.67 |
| PGSC0003DMT400015516 | Potato | cytosol | 13.29 | 15.94 |
| Solyc11g005160.1.1 | Tomato | nucleus | 20.54 | 15.81 |
| PGSC0003DMT400015444 | Potato | cytosol | 9.06 | 13.27 |
| PGSC0003DMT400015469 | Potato | cytosol | 16.62 | 12.39 |
Protein Annotations
| ArrayExpress:AT2G26160 | EMBL:DQ446568 | EnsemblPlants:AT2G26160.1 | EnsemblPlantsGene:AT2G26160 | EntrezGene:817156 | InterPro:DUF295 |
| PANTHER:PTHR33110 | PANTHER:PTHR33110:SF20 | PFAM:PF03478 | ProteinID:AAM15003.1 | ProteinID:AEC07802.1 | ProteinID:OAP11025.1 |
| RefSeq:AT2G26160 | RefSeq:AT2G26160-TAIR-G | RefSeq:NP_180185.2 | SEG:seg | TAIR:AT2G26160 | TAIR:AT2G26160.1 |
| Unigene:At.52922 | UniParc:UPI0000529E16 | UniProt:A0A178W0I3 | UniProt:Q1PEZ8 | MapMan:35.1 | : |
Description
F-box protein At2g26160 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEZ8]
Coordinates
chr2:-:11137978..11139451
Molecular Weight (calculated)
37954.0 Da
IEP (calculated)
8.925
GRAVY (calculated)
-0.111
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPEWSELP GDLINLTANR FSSISDVLRV RSICKPWRSA AATPKSFQCN LPSSNKMIET VLSPTTFFRV TGPSSCSYKG WLIRTKQVSE SSKINLLSPF
101: FRQLLTPSQQ TLDLLKFEVS EIRQSYEIHI FDKYLIQGVI GKEGPSHILS RVVFLDNLIF AVGQDDKIWC CKSGEESSRI WTKIKNQVED FLDIILHKGQ
201: VYALDLTGAI WWISLSPLSL LQFTPSIPMD YDGYDSCNKR LVEYCGDLCI IHQLRLKKAY IRRSQRTVGF KVYKMDEYVA KWVEVRSLGD KALIVARDSC
301: FTVVASEYHG CLNNSIYFVD NVRKSVIRMK L
101: FRQLLTPSQQ TLDLLKFEVS EIRQSYEIHI FDKYLIQGVI GKEGPSHILS RVVFLDNLIF AVGQDDKIWC CKSGEESSRI WTKIKNQVED FLDIILHKGQ
201: VYALDLTGAI WWISLSPLSL LQFTPSIPMD YDGYDSCNKR LVEYCGDLCI IHQLRLKKAY IRRSQRTVGF KVYKMDEYVA KWVEVRSLGD KALIVARDSC
301: FTVVASEYHG CLNNSIYFVD NVRKSVIRMK L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.