Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT1G65735.1 | Thale cress | cytosol | 11.05 | 64.06 |
AT1G65760.1 | Thale cress | cytosol, golgi, plasma membrane | 60.92 | 62.43 |
AT1G65770.1 | Thale cress | plastid | 46.63 | 48.06 |
AT2G17690.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 45.55 | 40.14 |
AT4G35733.1 | Thale cress | cytosol | 36.39 | 37.71 |
AT2G26160.1 | Thale cress | cytosol | 29.92 | 33.53 |
AT3G25750.2 | Thale cress | cytosol | 32.08 | 32.87 |
AT1G57906.1 | Thale cress | cytosol | 19.95 | 32.46 |
AT1G44080.1 | Thale cress | nucleus | 30.19 | 32.28 |
KRH69707 | Soybean | cytosol | 23.72 | 23.22 |
PGSC0003DMT400015524 | Potato | cytosol | 10.24 | 21.23 |
KRH07955 | Soybean | plastid | 11.05 | 19.16 |
Solyc02g083170.2.1 | Tomato | nucleus | 23.99 | 18.31 |
AT2G17030.1 | Thale cress | cytosol | 19.95 | 18.18 |
PGSC0003DMT400015519 | Potato | cytosol | 20.22 | 18.16 |
PGSC0003DMT400015466 | Potato | cytosol | 20.75 | 17.82 |
PGSC0003DMT400003919 | Potato | cytosol | 23.18 | 17.81 |
AT2G17036.1 | Thale cress | cytosol | 19.14 | 17.57 |
Solyc11g005160.1.1 | Tomato | nucleus | 19.68 | 16.98 |
AT5G60060.1 | Thale cress | cytosol | 16.71 | 16.58 |
PGSC0003DMT400015444 | Potato | cytosol | 9.97 | 16.37 |
PGSC0003DMT400015516 | Potato | cytosol | 11.86 | 15.94 |
PGSC0003DMT400015473 | Potato | cytosol | 18.06 | 15.84 |
PGSC0003DMT400015469 | Potato | cytosol | 15.36 | 12.84 |
Protein Annotations
MapMan:35.1 | EntrezGene:842885 | UniProt:A0A178WKU7 | ProteinID:AAF23839.1 | ProteinID:AEE34419.1 | ArrayExpress:AT1G65740 |
EnsemblPlantsGene:AT1G65740 | RefSeq:AT1G65740 | TAIR:AT1G65740 | RefSeq:AT1G65740-TAIR-G | EnsemblPlants:AT1G65740.1 | TAIR:AT1G65740.1 |
Unigene:At.66107 | InterPro:DUF295 | GO:GO:0000724 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009378 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
GO:GO:0032508 | GO:GO:0043140 | RefSeq:NP_176751.1 | ProteinID:OAP18938.1 | PFAM:PF03478 | PANTHER:PTHR13710 |
PANTHER:PTHR13710:SF83 | UniProt:Q9SHY1 | UniParc:UPI000016323A | SEG:seg | : | : |
Description
Probable F-box protein At1g65740 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY1]
Coordinates
chr1:-:24452096..24453211
Molecular Weight (calculated)
42300.4 Da
IEP (calculated)
7.806
GRAVY (calculated)
-0.272
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDWSTLPEE LLHFIAARSF SLVEYKRFSS ICVSWHSSVS GVKKNPFHRR PLIDFNPIAP SETLLEDHVF SCNPGAFLSR AAFFRVTLSS SPSKGWIIKS
101: DMDTNSGRFH LLNPLSRFPL RISSESLDLL DFTVSEIQES YAVLKDAKGR LPNPGYQRSA LVKVKEGDDH HHGILGIGRD GTINYWNGNV LNGFKQMGHH
201: FSDIIVHKGV TYVLDSKGIV WCINSDLEMS RYETSLDENM TNGCRRYYMR FVDCCGELYV IKRLPKENSR KRKSTLFQFS RTAGFKVYKI DKELAKWVEV
301: KTLGDNAFVM ATDTCFSVLA HEYYGCLPNS IYFIEDLEPK VFQLDNGNGS SITRKSESSE SSFEMFFPSF L
101: DMDTNSGRFH LLNPLSRFPL RISSESLDLL DFTVSEIQES YAVLKDAKGR LPNPGYQRSA LVKVKEGDDH HHGILGIGRD GTINYWNGNV LNGFKQMGHH
201: FSDIIVHKGV TYVLDSKGIV WCINSDLEMS RYETSLDENM TNGCRRYYMR FVDCCGELYV IKRLPKENSR KRKSTLFQFS RTAGFKVYKI DKELAKWVEV
301: KTLGDNAFVM ATDTCFSVLA HEYYGCLPNS IYFIEDLEPK VFQLDNGNGS SITRKSESSE SSFEMFFPSF L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.