Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65735.1 | Thale cress | cytosol | 10.09 | 35.94 |
| AT2G17690.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 41.67 | 22.57 |
| AT1G65740.1 | Thale cress | cytosol | 32.46 | 19.95 |
| AT1G65770.1 | Thale cress | plastid | 30.7 | 19.44 |
| AT2G26160.1 | Thale cress | cytosol | 26.75 | 18.43 |
| AT4G35733.1 | Thale cress | cytosol | 28.51 | 18.16 |
| AT1G65760.1 | Thale cress | cytosol, golgi, plasma membrane | 27.63 | 17.4 |
| AT1G44080.1 | Thale cress | nucleus | 23.68 | 15.56 |
| AT3G25750.2 | Thale cress | cytosol | 24.56 | 15.47 |
| PGSC0003DMT400015524 | Potato | cytosol | 11.84 | 15.08 |
| KRH69707 | Soybean | cytosol | 24.56 | 14.78 |
| PGSC0003DMT400015516 | Potato | cytosol | 15.35 | 12.68 |
| AT5G60060.1 | Thale cress | cytosol | 20.18 | 12.3 |
| PGSC0003DMT400015444 | Potato | cytosol | 10.96 | 11.06 |
| AT2G17030.1 | Thale cress | cytosol | 18.42 | 10.32 |
| PGSC0003DMT400015473 | Potato | cytosol | 18.42 | 9.93 |
| KRH07955 | Soybean | plastid | 9.21 | 9.81 |
| AT2G17036.1 | Thale cress | cytosol | 17.11 | 9.65 |
| PGSC0003DMT400015519 | Potato | cytosol | 17.11 | 9.44 |
| PGSC0003DMT400015466 | Potato | cytosol | 17.54 | 9.26 |
| Solyc11g005160.1.1 | Tomato | nucleus | 17.11 | 9.07 |
| PGSC0003DMT400015469 | Potato | cytosol | 17.54 | 9.01 |
| PGSC0003DMT400003919 | Potato | cytosol | 18.86 | 8.9 |
| Solyc02g083170.2.1 | Tomato | nucleus | 17.54 | 8.23 |
Protein Annotations
| MapMan:35.1 | EntrezGene:842163 | ProteinID:AAG50666.1 | ProteinID:AEE33478.1 | ArrayExpress:AT1G57906 | EnsemblPlantsGene:AT1G57906 |
| RefSeq:AT1G57906 | TAIR:AT1G57906 | RefSeq:AT1G57906-TAIR-G | EnsemblPlants:AT1G57906.1 | TAIR:AT1G57906.1 | Unigene:At.52249 |
| GO:GO:0000724 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009378 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | GO:GO:0043140 | RefSeq:NP_176097.1 |
| PANTHER:PTHR13710 | PANTHER:PTHR13710:SF83 | UniProt:Q9C656 | UniParc:UPI000009E4BB | : | : |
Description
F-box protein [Source:UniProtKB/TrEMBL;Acc:Q9C656]
Coordinates
chr1:+:21435427..21436810
Molecular Weight (calculated)
26200.4 Da
IEP (calculated)
4.656
GRAVY (calculated)
-0.175
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHFYVNNEI NKRIIEKTKE SNQLPNFLRL EAEDDRFTLN GKKVVLAGGD RVFGIGFDGK IRFWNGEIWT RIKDQIGEFS DIIVLKELIY VLDTKGIVWW
101: ISIVRYGTSL TNECGGDLSL VACCGELYIV DRLFKENVLK RKADYLDLDD NVYVGVAPRI SNVIHDDFGN EKCNVDQEVE IECPKMVGFN VYKVDEELGK
201: WVEVKSLRDS AVVMATDTCF SVMAHEYY
101: ISIVRYGTSL TNECGGDLSL VACCGELYIV DRLFKENVLK RKADYLDLDD NVYVGVAPRI SNVIHDDFGN EKCNVDQEVE IECPKMVGFN VYKVDEELGK
201: WVEVKSLRDS AVVMATDTCF SVMAHEYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.