Factsheet for AT2G17690.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G65735.1	Thale cress	cytosol	9.98	65.62
AT1G65770.1	Thale cress	plastid	41.33	48.33
AT1G65740.1	Thale cress	cytosol	40.14	45.55
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	36.82	42.82
AT1G57906.1	Thale cress	cytosol	22.57	41.67
AT4G35733.1	Thale cress	cytosol	35.15	41.34
AT3G25750.2	Thale cress	cytosol	33.25	38.67
AT1G44080.1	Thale cress	nucleus	30.64	37.18
AT2G26160.1	Thale cress	cytosol	27.55	35.05
KRH69707	Soybean	cytosol	24.94	27.7
KRH07955	Soybean	plastid	11.88	23.36
PGSC0003DMT400015524	Potato	cytosol	9.5	22.35
AT5G60060.1	Thale cress	cytosol	18.29	20.59
PGSC0003DMT400015466	Potato	cytosol	19.95	19.44
PGSC0003DMT400015519	Potato	cytosol	18.76	19.13
AT2G17030.1	Thale cress	cytosol	18.29	18.92
PGSC0003DMT400015473	Potato	cytosol	19.0	18.91
Solyc02g083170.2.1	Tomato	nucleus	19.95	17.28
PGSC0003DMT400015444	Potato	cytosol	9.26	17.26
Solyc11g005160.1.1	Tomato	nucleus	17.58	17.21
PGSC0003DMT400003919	Potato	cytosol	19.24	16.77
PGSC0003DMT400015516	Potato	cytosol	10.93	16.67
AT2G17036.1	Thale cress	cytosol	15.91	16.58
PGSC0003DMT400015469	Potato	cytosol	13.78	13.06

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:816276	ProteinID:AEC06666.1	ArrayExpress:AT2G17690	EnsemblPlantsGene:AT2G17690
RefSeq:AT2G17690	TAIR:AT2G17690	RefSeq:AT2G17690-TAIR-G	EnsemblPlants:AT2G17690.1	TAIR:AT2G17690.1	EMBL:DQ069841
InterPro:DUF295	InterPro:F-box-like_dom_sf	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	RefSeq:NP_179360.1	PFAM:PF03478
PANTHER:PTHR13710	PANTHER:PTHR13710:SF83	UniProt:Q3EBY8	Symbol:SDC	SUPFAM:SSF81383	UniParc:UPI0000162352

Description

SDCF-box protein At2g17690 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBY8]

Coordinates

chr2:+:7682162..7684083

Molecular Weight (calculated)

48055.5 Da

IEP (calculated)

8.525

GRAVY (calculated)

-0.230

Length

421 amino acids

Sequence
(BLAST)

001: MGDWSKLPEE LLGLIALRLY SVIELIRFRS ICKSWRSSAS GVNKNHSLSS PLIYFKPLQI ILARAQANGQ ILSKYHGTVL SRATFFRVTL ASSPDQGWLI
101: KSDTDLKYRN FHLLNCLSRK ALGRSRKLIS LSEFIVSEIQ ESYAVVGRRT RETASEFKRV FLVRVQGGDH RVLVIGIDGK IRFWKGGIWN GIKKQVAQFS
201: DFVLDEGLTY AVDTKGIMWW ISSAYDIIRY GTKLHENITN GSCGEKRFVR CRGELYIVDR LIDENLLKRK ADSYDDNAIV HFRNADYTNA DLWEDGNGND
301: DFFAAQAHRF IHVLHDNLGN VSCKPFERDP PKTIGFKVYK NDEELLKWVE VKSLGDKAIV IATDACFSVS AHEFYGCLPN SIYFTDKKEE EVKVFKLDDG
401: SITTMSESEQ SCFQMFVPSF L

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.