Factsheet for Solyc02g083170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003919	Potato	cytosol	84.77	85.3
Solyc11g005160.1.1	Tomato	nucleus	33.95	38.37
KRH07955	Soybean	plastid	13.17	29.91
KRH69707	Soybean	cytosol	23.05	29.55
Solyc01g111920.2.1	Tomato	cytosol	21.6	25.86
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	18.93	25.41
AT4G35733.1	Thale cress	cytosol	18.52	25.14
AT2G26160.1	Thale cress	cytosol	16.67	24.47
AT1G65740.1	Thale cress	cytosol	18.31	23.99
AT1G44080.1	Thale cress	nucleus	17.08	23.92
CDY41638	Canola	cytosol	16.67	23.08
AT1G65770.1	Thale cress	plastid	17.08	23.06
CDY64038	Canola	cytosol	16.26	22.83
AT3G25750.2	Thale cress	cytosol	16.87	22.65
Bra010521.1-P	Field mustard	cytosol	16.46	22.47
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	17.28	19.95
AT1G57906.1	Thale cress	cytosol	8.23	17.54

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	InterPro:IPR001810	UniProt:K4BAI5	PFAM:PF00646	PFAM:PF03478
PANTHER:PTHR13710	PANTHER:PTHR13710:SF86	SMART:SM00256	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc02g083170.2	EnsemblPlants:Solyc02g083170.2.1
UniParc:UPI00027684B1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:46674160..46676119

Molecular Weight (calculated)

55001.3 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.474

Length

486 amino acids

Sequence
(BLAST)

001: MEQQTVGSGR YVPWSDLPKE LAERIGSCLD TQIDVLRFRS VCTTWRSSLA PFKTVPHFPV EIPYPLDDRN IYKGRPGYYL IESTVYIFQP LDGDSIDSPC
101: KGWLIQVIKT ADGKLKVLNP LTGREIQNHM PKVLNLLDFR VSEVCKSYHV QYYIPSKPLF SDYDVGYVRK ILLLMNHNGG SEKDSFSLMA IDRDNRLCYL
201: NSGNDKWTKL KNSSSYIDDI IVYKGNFHAV DRYGETMKFD SSFSETTVAS RFYGETTKID SSFDEEVASR LSGGKKKKRL VESGGQLFLV DKSSDFGKDA
301: SHEIKIYRLD EKQYEWIEVH TLGDRIFFAV SDCCFSVSSR DFGDKYGRGN CLYYAKGSMY FNDEDSDDDF GMCGCCCPLD DDVVGGDEIS YPISNYGDST
401: SISNGDHRIN ASTSKSGEVV VDRYKGVFDD NTYVFTIEDG KLGSLLSSLD YAEILWPPPS WLNGEDEPHP HDHEIAESLL SIHKQG

Best Arabidopsis Sequence Match ( AT2G17036.1 )
(BLAST)

001: MMDWATLPKD LLDLISKCLE SSFDLIQFRS VCSSWRSAAG PKRLLWAHNL PFFPSDDKPF LSNVILRVAH QSILLIKPNE PQCEADLFGW IVKVWDNIYV
101: SRKMTLLKPL SSSRNYFPQH LPRIFDMSKF TVRELCREVK LYHPDYYCVP GHTALELELG KTVVKYLNDD KFVLLTILEY GKLAVFRSWD REWTVINDYI
201: PSRCQDLIMF DGRFFAIDYN GRTVVVDYSS FKLTLAANPL IGGGDKKFLI ESCGEMFLVD IEFCLNEKPE FTGGFYSYFN ETTVSYKFKF FKLVEREKRW
301: VEVEDLGDKM FFLGDDSTFS ASTADIIPRC VGTGSFVFFY THEESLVVMD DRNLGVFDFR SGKTELVNKL PEYAKLFWPP PPWITTSHES VENYTGETSS
401: QSQS

Arabidopsis Description

F-box protein At2g17036 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.