CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64038	Canola	cytosol	89.46	90.75
AT4G35733.1	Thale cress	cytosol	59.83	58.66
KRH69707	Soybean	cytosol	27.35	25.33
PGSC0003DMT400015524	Potato	cytosol	11.97	23.46
KRH07955	Soybean	plastid	11.97	19.63
PGSC0003DMT400015519	Potato	cytosol	22.22	18.89
PGSC0003DMT400015444	Potato	cytosol	11.97	18.58
CDX71060	Canola	cytosol	19.09	18.31
PGSC0003DMT400015466	Potato	cytosol	22.51	18.29
Solyc11g005160.1.1	Tomato	nucleus	22.22	18.14
PGSC0003DMT400015516	Potato	cytosol	14.24	18.12
CDX88737	Canola	cytosol	18.8	17.98
CDY67092	Canola	cytosol	20.23	17.44
PGSC0003DMT400015473	Potato	cytosol	20.51	17.02
Solyc02g083170.2.1	Tomato	nucleus	23.08	16.67
PGSC0003DMT400003919	Potato	cytosol	22.22	16.15
PGSC0003DMT400015469	Potato	cytosol	16.81	13.29

Protein Annotations

EnsemblPlants:CDY41638	EnsemblPlantsGene:GSBRNA2T00073297001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF295
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86	PFAM:PF03478
ProteinID:CDY41638	ProteinID:CDY41638.1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EDD599	UniProt:A0A078HY28
MapMan:35.1	:	:	:	:	:

Description

BnaC03g62460DBnaC03g62460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY28]

Coordinates

chrLK032502:-:81953..83092

Molecular Weight (calculated)

41139.0 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.351

Length

351 amino acids

Sequence
(BLAST)

001: MSQSVEWSGL PEELVDEIAG RLFSKVELHR VRSICKPWRS ASSIHKRYPK RHNRNRVRVL SPFSNIKPCL LSPAAFFRVF LSSCRNKGWL IKTQDVYETR
101: SETRKKLLHP LSRVPMDSSQ QTLDLLEYTV SEIHQSYDVH KYHKTSYNFA RVVLMDKFVF GVNDKKEIWW CNNEEISDEE AEYFSDIIVH KGQIYALDLN
201: SAIWWISLSE LKIFQYGPST PMDYYEFDDC KDKRLVEFCG ELCIIHRFCK TFRVRRVDVE RTTGFKVYKM NMELVEWVEV KSLGDNAFVM ATDSCFSVVS
301: SDYYGCLENA IYFTEEKDVN NVNVFKLGDG SVTNLGESSE NCFHMFYPPF V

Best Arabidopsis Sequence Match ( AT4G35733.1 )
(BLAST)

001: MSEATVWSDL PGELLDHIAN GLFSKVELLR FRSICKTFRS AVDSDKNFLD HLKRNRRRLL SPYSTGKTCS LSPAAFYRVV LSSYPDKGWL IKLQDAYVSS
101: QKQLLSPLSR FSIKSSGKTL DLLEFTVSEI HQSYDVEYLY YNSTRASFNF ARVVLAEDFV FIVDNYKKIW LCNSNESDSH WVRIMDEEVK LFSDIVFHKG
201: YMYALDLTGA VWWISLSEFG IFQFGPSSTP MDYCDIDECK DKRFVEYCGD LCIVHRFSRK FRIKRVDIDM TVGFKVYKMD EELVEYVEVK SLGDKAFVMA
301: TDSCFSVLAR EYYGCLENSI YFTEQNNVKV FKLGDGSITN MVDSSFQSCF QMLIPPLV

Arabidopsis Description

F-box protein At4g35733 [Source:UniProtKB/Swiss-Prot;Acc:B3H6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.