Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88737 | Canola | cytosol | 88.52 | 88.28 |
| AT5G60060.1 | Thale cress | cytosol | 72.4 | 70.86 |
| CDY67092 | Canola | cytosol | 27.6 | 24.82 |
| CDY64038 | Canola | cytosol | 18.58 | 19.65 |
| CDY41638 | Canola | cytosol | 18.31 | 19.09 |
| VIT_00s0338g00010.t01 | Wine grape | cytosol | 1.91 | 1.73 |
Protein Annotations
| EnsemblPlants:CDX71060 | EnsemblPlantsGene:GSBRNA2T00141005001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF295 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF86 |
| PFAM:PF00646 | PFAM:PF03478 | ProteinID:CDX71060 | ProteinID:CDX71060.1 | SEG:seg | SUPFAM:SSF81383 |
| UniParc:UPI0004EE1787 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g11440D
Coordinates
chrLK031791:+:3476951..3478051
Molecular Weight (calculated)
41566.3 Da
IEP (calculated)
7.139
GRAVY (calculated)
-0.362
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSSLLLRY QWSDLPLDLL ELISDRLNDG SSDTVDLLRL RSVCATWRRS LPLSNKNTNP LSKFPPLLPF WSSSSSGFFI LKQSSVYKLE ASQSWLVKLQ
101: ETSPGKMRVL DLFSNDRICF KPENFPEKID LRESHVRLVR RSYRVEYANK GGGEMSSFWS LSSDKVVVLS SRGHSAVIAI HSGGKLGFLK SGDDERWRIL
201: DNSWNVTYED IMSYGENCIV VDDKGRTVIY DVEFKVSDLA EGLPGGGGHK KHLVECHGGG VFLVDKYVKH VWCKSEFSKS AVEFRVYKLK REEKRWEEVR
301: ELRDVALFIG EDCSFSVEIM DGDLAGGGCI FYRDYRNGGR SRGVYSDGDG VFNMELTNAG KFWVSY
101: ETSPGKMRVL DLFSNDRICF KPENFPEKID LRESHVRLVR RSYRVEYANK GGGEMSSFWS LSSDKVVVLS SRGHSAVIAI HSGGKLGFLK SGDDERWRIL
201: DNSWNVTYED IMSYGENCIV VDDKGRTVIY DVEFKVSDLA EGLPGGGGHK KHLVECHGGG VFLVDKYVKH VWCKSEFSKS AVEFRVYKLK REEKRWEEVR
301: ELRDVALFIG EDCSFSVEIM DGDLAGGGCI FYRDYRNGGR SRGVYSDGDG VFNMELTNAG KFWVSY
001: MDSSSLLPSQ WSDLPLDILE LISDRLDHDS SDTIHLLCLR SVCATWRLSL PLSNKNNRLS KFPKYLPFWS SSSSSSGFFT LKQSNVYKLE APLNPRTCLV
101: KLQETTPGIM RVLDLFSNDR ICFLPENFPS KIDLQEFHVR LVRRTYRMEY ANNGGGAVPC FWSLHSDKVV ILSSGEDSAI IAIHSGGKLG FLKSGNDEKW
201: KILDNSWNVI YEDIMLYKDN RCIVVDDKGK TVIYDVDFKV SDLAEGLVGG GGHKKHLVEC SGGEVFLVDK YVKTVWCKSD ISKSVVEFRV YNLKREEKRW
301: EEVRDLGDVA LFIGDDCSFS VQNPAGDLAG GFIFYSDYRN GGRSRGICSD GDGVFNVDMQ GDFVFSIKPN YFGP
101: KLQETTPGIM RVLDLFSNDR ICFLPENFPS KIDLQEFHVR LVRRTYRMEY ANNGGGAVPC FWSLHSDKVV ILSSGEDSAI IAIHSGGKLG FLKSGNDEKW
201: KILDNSWNVI YEDIMLYKDN RCIVVDDKGK TVIYDVDFKV SDLAEGLVGG GGHKKHLVEC SGGEVFLVDK YVKTVWCKSD ISKSVVEFRV YNLKREEKRW
301: EEVRDLGDVA LFIGDDCSFS VQNPAGDLAG GFIFYSDYRN GGRSRGICSD GDGVFNVDMQ GDFVFSIKPN YFGP
Arabidopsis Description
Putative F-box protein At5g60060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.