Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g03630.t01 | Wine grape | cytosol, plastid | 2.96 | 4.05 |
| VIT_03s0038g02910.t01 | Wine grape | golgi | 2.47 | 2.67 |
| CDX71060 | Canola | cytosol | 1.73 | 1.91 |
| Bra006681.1-P | Field mustard | cytosol | 1.73 | 1.91 |
| CDX88737 | Canola | cytosol | 1.73 | 1.91 |
| VIT_03s0038g02890.t01 | Wine grape | cytosol | 1.23 | 1.08 |
Protein Annotations
| ArrayExpress:VIT_00s0338g00010 | EMBL:FN596250 | EnsemblPlants:VIT_00s0338g00010.t01 | EnsemblPlantsGene:VIT_00s0338g00010 | EntrezGene:100248820 | EntrezGene:LOC100248820 |
| Gene3D:1.20.1280.50 | InterPro:DUF295 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF86 | PFAM:PF03478 | ProteinID:CCB58178 |
| ProteinID:CCB58178.1 | RefSeq:XP_002278547 | RefSeq:XP_002278547.2 | TIGR:TC58643 | TIGR:TC61085 | unigene:Vvi.3069 |
| UniParc:UPI0002108300 | UniProt:F6HU16 | wikigene:100248820 | wikigene:LOC100248820 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrUn:+:24126005..24131364
Molecular Weight (calculated)
46417.3 Da
IEP (calculated)
6.025
GRAVY (calculated)
-0.312
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDAGQWSH LPKDLLAKIA GRLDTRIDFL HFRGVCSSWM SSVSPTFPRK NPILSLKLPY PIASNANLNI CDPDTRNPHG SFSLIESTLY YLQPLRQTPD
101: SKEALLVKLE EPKPGKGRLM DTLSRCAIQH LPKNFPKVLN TLNFRVREVG KAYGLRFFDV RGKPITSFEF KSILIKKVIM FSKGDEYGLM MIHIRGRLAL
201: WRLGEEKWSL IDDGAEKSHF DDVIYYKGRF YAIDYKGRIV VIDADSLKAT ELASPVHGSR GTHKHFVESF GELFLVDKYL DDELQIFCND YSDIVADVPD
301: YPVHFEVFKF IEEEQKWDWV SDIGDRVLFV GDDRTFSLSS TDFPGFKGNC VYFTQDCFCE EDDDRPGFDA GIFDLEERIA GPLSAFPGYS KIFWPPPAWL
401: RPQRS
101: SKEALLVKLE EPKPGKGRLM DTLSRCAIQH LPKNFPKVLN TLNFRVREVG KAYGLRFFDV RGKPITSFEF KSILIKKVIM FSKGDEYGLM MIHIRGRLAL
201: WRLGEEKWSL IDDGAEKSHF DDVIYYKGRF YAIDYKGRIV VIDADSLKAT ELASPVHGSR GTHKHFVESF GELFLVDKYL DDELQIFCND YSDIVADVPD
301: YPVHFEVFKF IEEEQKWDWV SDIGDRVLFV GDDRTFSLSS TDFPGFKGNC VYFTQDCFCE EDDDRPGFDA GIFDLEERIA GPLSAFPGYS KIFWPPPAWL
401: RPQRS
001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS
Arabidopsis Description
SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.