Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006681.1-P | Field mustard | cytosol | 99.73 | 99.73 |
| CDX71060 | Canola | cytosol | 88.28 | 88.52 |
| AT5G60060.1 | Thale cress | cytosol | 71.39 | 70.05 |
| CDY67092 | Canola | cytosol | 28.07 | 25.31 |
| CDY41638 | Canola | cytosol | 17.98 | 18.8 |
| CDY64038 | Canola | cytosol | 17.71 | 18.79 |
| VIT_00s0338g00010.t01 | Wine grape | cytosol | 1.91 | 1.73 |
Protein Annotations
| EnsemblPlants:CDX88737 | EnsemblPlantsGene:GSBRNA2T00148790001 | InterPro:DUF295 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF86 | PFAM:PF03478 |
| ProteinID:CDX88737 | ProteinID:CDX88737.1 | SEG:seg | UniParc:UPI0004EDC1B1 | MapMan:35.1 | : |
Description
BnaA03g09120D
Coordinates
chrLK031856:-:727425..728528
Molecular Weight (calculated)
41611.3 Da
IEP (calculated)
5.729
GRAVY (calculated)
-0.305
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSLVLPSQ WSNLPLDLLE LISDSDYVNE CSSDTVDLLR LRSVCSTWRR SLPLSNKNPL SKFPPLLPFW SSSPSGFFIL KQSSVYKLEA HPTSWLVKLQ
101: EISPGTMRVL DLFSNDRLRF LPENFPEKVD LRESHVRLVR RAYRVEYANR GGGEMSSFWS LSSDKVVVLS SREHSAVIAI HSGGKLGFLK NGDDEIWKIL
201: DNSWNVTYED IITYGENCIV VDDKGKTVIY DVEFKVSDLA EGLAGGGGHK KHLVECYGGE VLLVDKYVKH VWCKSEFSKS AVEFRVYKLK REEKRWEEVR
301: ELGRDVALFV GEDCSFSVEI TDGDLAGGGC IFYRDYRNGG RSRGVYSDGD GVFNMELKDA GKFWVSY
101: EISPGTMRVL DLFSNDRLRF LPENFPEKVD LRESHVRLVR RAYRVEYANR GGGEMSSFWS LSSDKVVVLS SREHSAVIAI HSGGKLGFLK NGDDEIWKIL
201: DNSWNVTYED IITYGENCIV VDDKGKTVIY DVEFKVSDLA EGLAGGGGHK KHLVECYGGE VLLVDKYVKH VWCKSEFSKS AVEFRVYKLK REEKRWEEVR
301: ELGRDVALFV GEDCSFSVEI TDGDLAGGGC IFYRDYRNGG RSRGVYSDGD GVFNMELKDA GKFWVSY
001: MDSSSLLPSQ WSDLPLDILE LISDRLDHDS SDTIHLLCLR SVCATWRLSL PLSNKNNRLS KFPKYLPFWS SSSSSSGFFT LKQSNVYKLE APLNPRTCLV
101: KLQETTPGIM RVLDLFSNDR ICFLPENFPS KIDLQEFHVR LVRRTYRMEY ANNGGGAVPC FWSLHSDKVV ILSSGEDSAI IAIHSGGKLG FLKSGNDEKW
201: KILDNSWNVI YEDIMLYKDN RCIVVDDKGK TVIYDVDFKV SDLAEGLVGG GGHKKHLVEC SGGEVFLVDK YVKTVWCKSD ISKSVVEFRV YNLKREEKRW
301: EEVRDLGDVA LFIGDDCSFS VQNPAGDLAG GFIFYSDYRN GGRSRGICSD GDGVFNVDMQ GDFVFSIKPN YFGP
101: KLQETTPGIM RVLDLFSNDR ICFLPENFPS KIDLQEFHVR LVRRTYRMEY ANNGGGAVPC FWSLHSDKVV ILSSGEDSAI IAIHSGGKLG FLKSGNDEKW
201: KILDNSWNVI YEDIMLYKDN RCIVVDDKGK TVIYDVDFKV SDLAEGLVGG GGHKKHLVEC SGGEVFLVDK YVKTVWCKSD ISKSVVEFRV YNLKREEKRW
301: EEVRDLGDVA LFIGDDCSFS VQNPAGDLAG GFIFYSDYRN GGRSRGICSD GDGVFNVDMQ GDFVFSIKPN YFGP
Arabidopsis Description
Putative F-box protein At5g60060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.