Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71060 | Canola | cytosol | 70.86 | 72.4 |
| CDX88737 | Canola | cytosol | 70.05 | 71.39 |
| Bra006681.1-P | Field mustard | cytosol | 69.79 | 71.12 |
| AT1G65735.1 | Thale cress | cytosol | 5.35 | 31.25 |
| AT2G17030.1 | Thale cress | cytosol | 24.87 | 22.85 |
| AT2G17036.1 | Thale cress | cytosol | 23.53 | 21.78 |
| AT1G65770.1 | Thale cress | plastid | 20.86 | 21.67 |
| AT2G26160.1 | Thale cress | cytosol | 18.72 | 21.15 |
| AT1G44080.1 | Thale cress | nucleus | 18.98 | 20.46 |
| AT1G57906.1 | Thale cress | cytosol | 12.3 | 20.18 |
| AT4G35733.1 | Thale cress | cytosol | 19.25 | 20.11 |
| AT3G25750.2 | Thale cress | cytosol | 19.25 | 19.89 |
| AT1G65760.1 | Thale cress | cytosol, golgi, plasma membrane | 18.18 | 18.78 |
| AT2G17690.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 20.59 | 18.29 |
| AT1G65740.1 | Thale cress | cytosol | 16.58 | 16.71 |
Protein Annotations
| MapMan:35.1 | EntrezGene:836128 | UniProt:A0A178UA12 | ProteinID:AED97272.1 | ArrayExpress:AT5G60060 | EnsemblPlantsGene:AT5G60060 |
| RefSeq:AT5G60060 | TAIR:AT5G60060 | RefSeq:AT5G60060-TAIR-G | EnsemblPlants:AT5G60060.1 | TAIR:AT5G60060.1 | ProteinID:BAA96935.1 |
| InterPro:DUF295 | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | RefSeq:NP_200814.1 | ProteinID:OAO90485.1 | PFAM:PF00646 | PFAM:PF03478 | PANTHER:PTHR13710 |
| PANTHER:PTHR13710:SF86 | UniProt:Q9LVG8 | UniParc:UPI00000AA3C8 | SEG:seg | : | : |
Description
Putative F-box protein At5g60060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVG8]
Coordinates
chr5:-:24188483..24189765
Molecular Weight (calculated)
42106.0 Da
IEP (calculated)
5.941
GRAVY (calculated)
-0.228
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSLLPSQ WSDLPLDILE LISDRLDHDS SDTIHLLCLR SVCATWRLSL PLSNKNNRLS KFPKYLPFWS SSSSSSGFFT LKQSNVYKLE APLNPRTCLV
101: KLQETTPGIM RVLDLFSNDR ICFLPENFPS KIDLQEFHVR LVRRTYRMEY ANNGGGAVPC FWSLHSDKVV ILSSGEDSAI IAIHSGGKLG FLKSGNDEKW
201: KILDNSWNVI YEDIMLYKDN RCIVVDDKGK TVIYDVDFKV SDLAEGLVGG GGHKKHLVEC SGGEVFLVDK YVKTVWCKSD ISKSVVEFRV YNLKREEKRW
301: EEVRDLGDVA LFIGDDCSFS VQNPAGDLAG GFIFYSDYRN GGRSRGICSD GDGVFNVDMQ GDFVFSIKPN YFGP
101: KLQETTPGIM RVLDLFSNDR ICFLPENFPS KIDLQEFHVR LVRRTYRMEY ANNGGGAVPC FWSLHSDKVV ILSSGEDSAI IAIHSGGKLG FLKSGNDEKW
201: KILDNSWNVI YEDIMLYKDN RCIVVDDKGK TVIYDVDFKV SDLAEGLVGG GGHKKHLVEC SGGEVFLVDK YVKTVWCKSD ISKSVVEFRV YNLKREEKRW
301: EEVRDLGDVA LFIGDDCSFS VQNPAGDLAG GFIFYSDYRN GGRSRGICSD GDGVFNVDMQ GDFVFSIKPN YFGP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.