Factsheet for AT3G25750.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G26160.1	Thale cress	cytosol	48.9	53.47
AT1G44080.1	Thale cress	nucleus	45.3	47.26
AT1G65735.1	Thale cress	cytosol	8.29	46.88
AT4G35733.1	Thale cress	cytosol	41.16	41.62
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	38.67	33.25
AT1G65770.1	Thale cress	plastid	32.6	32.78
AT1G65740.1	Thale cress	cytosol	32.87	32.08
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	30.94	30.94
AT1G57906.1	Thale cress	cytosol	15.47	24.56
KRH69707	Soybean	cytosol	25.14	24.01
KRH07955	Soybean	plastid	12.15	20.56
PGSC0003DMT400015524	Potato	cytosol	9.94	20.11
AT2G17030.1	Thale cress	cytosol	22.38	19.9
AT5G60060.1	Thale cress	cytosol	19.89	19.25
PGSC0003DMT400015519	Potato	cytosol	21.55	18.89
PGSC0003DMT400015466	Potato	cytosol	22.1	18.52
Solyc11g005160.1.1	Tomato	nucleus	21.82	18.37
PGSC0003DMT400015473	Potato	cytosol	20.17	17.26
PGSC0003DMT400015516	Potato	cytosol	12.98	17.03
Solyc02g083170.2.1	Tomato	nucleus	22.65	16.87
AT2G17036.1	Thale cress	cytosol	18.78	16.83
PGSC0003DMT400003919	Potato	cytosol	21.82	16.36
PGSC0003DMT400015444	Potato	cytosol	9.67	15.49
PGSC0003DMT400015469	Potato	cytosol	16.02	13.06

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:822166	ProteinID:AEE77064.1	ProteinID:ANM63366.1	ArrayExpress:AT3G25750
EnsemblPlantsGene:AT3G25750	RefSeq:AT3G25750	TAIR:AT3G25750	RefSeq:AT3G25750-TAIR-G	EnsemblPlants:AT3G25750.2	Unigene:At.53496
ProteinID:BAA95762.1	InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	InterPro:IPR001810	RefSeq:NP_001325458.1
RefSeq:NP_189203.1	PFAM:PF00646	PFAM:PF03478	PANTHER:PTHR13710	PANTHER:PTHR13710:SF83	UniProt:Q9LS04
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000242F639	:	:	:

Description

Putative F-box protein At3g25750 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS04]

Coordinates

chr3:+:9400955..9402088

Molecular Weight (calculated)

42085.5 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.342

Length

362 amino acids

Sequence
(BLAST)

001: MEKTEWSDLP EELLDLIANR YSSNIDVLRI RSTCKSWRSA VAMSKERLQF RFERYLPTSN KKIKAHLSPT TFFRITLPSS CPNKGWLVRT RQASKMYRKI
101: TLLCPLSGER ITRSHQTLDL LKVGVSEIRQ SYEIQIFDGL KDEKIPLDSE IFSNYIKNSD KIPSVNYHDN KIWCCKTREG SRSWTKIKNQ VEDFSDIILH
201: MGRIYAVDLK GAIWWISLSQ LTIVQQTSST PLDYYKYDSC QDTRLVEYCG DLCIVHELSI TRNHIQRTVG FKVYKMDEDL AKWVEVSCLG DNTLIVACNS
301: CFTVVASEYH GCLKNSIYFS YYDVKKAENI KVFKLDDGSI TQRTDISSQS CFHMFSLPFL NY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.