Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67092 | Canola | cytosol | 80.59 | 80.59 |
| AT2G17036.1 | Thale cress | cytosol | 57.0 | 57.43 |
| KRH32947 | Soybean | endoplasmic reticulum, vacuole | 29.98 | 46.04 |
| VIT_03s0038g03630.t01 | Wine grape | cytosol, plastid | 31.7 | 43.58 |
| Solyc01g111920.2.1 | Tomato | cytosol | 39.8 | 39.9 |
| PGSC0003DMT400047938 | Potato | cytosol | 39.8 | 39.61 |
| VIT_03s0038g02910.t01 | Wine grape | golgi | 33.91 | 36.8 |
| VIT_03s0038g02890.t01 | Wine grape | cytosol | 35.63 | 31.45 |
| AT2G26160.1 | Thale cress | cytosol | 20.88 | 25.68 |
| AT5G60060.1 | Thale cress | cytosol | 22.85 | 24.87 |
| AT1G44080.1 | Thale cress | nucleus | 19.41 | 22.77 |
| AT3G25750.2 | Thale cress | cytosol | 19.9 | 22.38 |
| AT1G65770.1 | Thale cress | plastid | 19.66 | 22.22 |
| AT4G35733.1 | Thale cress | cytosol | 18.18 | 20.67 |
| AT1G65735.1 | Thale cress | cytosol | 3.19 | 20.31 |
| AT1G65740.1 | Thale cress | cytosol | 18.18 | 19.95 |
| AT1G65760.1 | Thale cress | cytosol, golgi, plasma membrane | 17.44 | 19.61 |
| AT1G57906.1 | Thale cress | cytosol | 10.32 | 18.42 |
| AT2G17690.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 18.92 | 18.29 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:816206 | UniProt:A0A178W0R3 | ProteinID:AEC06574.1 | EMBL:AK228215 |
| ArrayExpress:AT2G17030 | EnsemblPlantsGene:AT2G17030 | RefSeq:AT2G17030 | TAIR:AT2G17030 | RefSeq:AT2G17030-TAIR-G | EnsemblPlants:AT2G17030.1 |
| TAIR:AT2G17030.1 | Unigene:At.40201 | EMBL:BT029773 | InterPro:DUF295 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0000724 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006284 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009378 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032508 | GO:GO:0043140 |
| InterPro:IPR001810 | RefSeq:NP_565401.1 | ProteinID:OAP11674.1 | PFAM:PF03478 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR13710 | PANTHER:PTHR13710:SF83 | UniProt:Q3EBZ2 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000016233C |
Description
SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
Coordinates
chr2:+:7399056..7400970
Molecular Weight (calculated)
46230.0 Da
IEP (calculated)
4.479
GRAVY (calculated)
-0.130
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.