Factsheet for VIT_03s0038g03630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17030.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02910.t01	Wine grape	golgi	56.42	44.53
VIT_03s0038g02890.t01	Wine grape	cytosol	54.73	35.14
AT2G17030.1	Thale cress	cytosol	43.58	31.7
Solyc01g111920.2.1	Tomato	cytosol	43.24	31.53
CDY67092	Canola	cytosol	43.24	31.45
PGSC0003DMT400047938	Potato	cytosol	42.91	31.05
KRH32947	Soybean	endoplasmic reticulum, vacuole	25.0	27.92
AT2G17036.1	Thale cress	cytosol	36.15	26.49
VIT_00s0338g00010.t01	Wine grape	cytosol	4.05	2.96

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	ProteinID:CCB60548	ProteinID:CCB60548.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F6I0T2	EMBL:FN596508	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006284	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009378
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	InterPro:IPR001810
PFAM:PF00646	PANTHER:PTHR13710	PANTHER:PTHR13710:SF83	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00021085EC
ArrayExpress:VIT_03s0038g03630	EnsemblPlantsGene:VIT_03s0038g03630	EnsemblPlants:VIT_03s0038g03630.t01	:	:	:

Description

No Description!

Coordinates

chr3:-:2609666..2612266

Molecular Weight (calculated)

33188.4 Da

IEP (calculated)

5.374

GRAVY (calculated)

-0.158

Length

296 amino acids

Sequence
(BLAST)

001: MAEWANLPRD LLHLIAKRLD SHFDLLRFRS VCSSWRSSTP SKPRSIFSHL PILPTTGFSE ITWAFYLSKR SILQLGLPDS RAQTTPNSWL IKIEEDPSGV
101: IRLINPLTTF KFRHLPPDFP KTFDFSGLRV FELGQEYVLE YMDYRPPGNA YLGSLYMEKV AFCSGNGDDF WLLTIHLSGK LAMFRSGDKK WMIIDDMQSP
201: YDDVIFFDGK FYAVDNTGRT VVVDVADGSS PVVNLAASSV FGGDKKVFEE DDASRSGTIG VFDLDSGSIG PLSSYANYSK TIWPPPAWVS STSEGM

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.