Factsheet for VIT_03s0038g02910.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 2
golgi 3
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
mitochondrion 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17030.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02890.t01	Wine grape	cytosol	85.6	69.63
VIT_03s0038g03630.t01	Wine grape	cytosol, plastid	44.53	56.42
Solyc01g111920.2.1	Tomato	cytosol	41.6	38.42
PGSC0003DMT400047938	Potato	cytosol	41.07	37.65
AT2G17030.1	Thale cress	cytosol	36.8	33.91
KRH32947	Soybean	endoplasmic reticulum, vacuole	23.73	33.58
CDY67092	Canola	cytosol	36.0	33.17
AT2G17036.1	Thale cress	cytosol	32.0	29.7
VIT_00s0338g00010.t01	Wine grape	cytosol	2.67	2.47

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100265942	wikigene:100265942	MapMan:35.1	ProteinID:CCB60593	ProteinID:CCB60593.1
InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6I0X7	EMBL:FN596508	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	InterPro:IPR001810	EntrezGene:LOC100265942	wikigene:LOC100265942	PFAM:PF00646
PFAM:PF03478	PANTHER:PTHR13710	PANTHER:PTHR13710:SF83	SUPFAM:SSF81383	UniParc:UPI00015C85AB	ArrayExpress:VIT_03s0038g02910
EnsemblPlantsGene:VIT_03s0038g02910	EnsemblPlants:VIT_03s0038g02910.t01	RefSeq:XP_002278342	RefSeq:XP_002278342.1	:	:

Description

No Description!

Coordinates

chr3:-:2048999..2050248

Molecular Weight (calculated)

42041.4 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.081

Length

375 amino acids

Sequence
(BLAST)

001: MARWSQLPKD LLLLIAQRLN THFDLLCLRS VCSSWHACVP SRPHPLPSRF PILPTNGTSW GLYLSRRTIL CLGLPESHCQ PTIGSWLIKV EEDVPDMAHL
101: VNPLSTFQFK HLPPNFPKTF DFSRFRVSEL GQEYVLQYMN HRPSGEADEG SLHKGKVAFS STSNGEDFVM LTIHVSGKLA MFRHGNKRLK TIDDMPSCDD
201: LIFFNGEFYA VDNTGRTVVV AIGSPPVLSL IADSVIGGNK KSLVESNGEL LMVNTYFDQG IHGIMNRAVR FKVFKLNQIG HMWVEVENLG DRILFLGEKS
301: TFSAVASEFC GCEGNCIYYT NSFFFPNDQE DDAYTGIGIF NLENGNLGPL SSFPNYSKVI WSPPAWVYID NIGDI

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.