Factsheet for PGSC0003DMT400047938

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111920.2.1	Tomato	cytosol	95.35	96.06
VIT_03s0038g03630.t01	Wine grape	cytosol, plastid	31.05	42.91
KRH32947	Soybean	endoplasmic reticulum, vacuole	27.38	42.26
VIT_03s0038g02910.t01	Wine grape	golgi	37.65	41.07
CDY67092	Canola	cytosol	39.85	40.05
AT2G17030.1	Thale cress	cytosol	39.61	39.8
AT2G17036.1	Thale cress	cytosol	33.25	33.66
VIT_03s0038g02890.t01	Wine grape	cytosol	37.65	33.41
PGSC0003DMT400015519	Potato	cytosol	26.16	25.91
PGSC0003DMT400015524	Potato	cytosol	11.25	25.7
PGSC0003DMT400015466	Potato	cytosol	24.94	23.61
PGSC0003DMT400015473	Potato	cytosol	23.47	22.7
PGSC0003DMT400015516	Potato	cytosol	15.16	22.46
PGSC0003DMT400003919	Potato	cytosol	26.16	22.15
PGSC0003DMT400015444	Potato	cytosol	11.74	21.24
PGSC0003DMT400015469	Potato	cytosol	17.6	16.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400047938	EnsemblPlantsGene:PGSC0003DMG400018632	EntrezGene:102578619	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710
PANTHER:PTHR13710:SF83	PFAM:PF00646	PFAM:PF03478	PGSC:PGSC0003DMG400018632	RefSeq:XP_015159460.1	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00029650FE	UniProt:M1BLN3	MapMan:35.1	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018632]

Coordinates

chr1:-:87996455..88001717

Molecular Weight (calculated)

46646.7 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.309

Length

409 amino acids

Sequence
(BLAST)

001: MAEWSQLPRE LVELISKHLS TETDFLRFRS VCSSWRSSLP PKPYPSSLSR FPILPNDGIA ENSWGFKLSK SPLYLIRPPN QTTSSDNHGW IIKLDRENPQ
101: RMRLFNPLSR SQCKPLPSDF PKILDSSQYP IRELCHEYTL QFIKYRPRAN SIADAGNLYM EKVAVRMEKN GFLLLTIHVS GKLVMFRSGD TKWSIVDESS
201: LPYDDVIMKD GNFYAVDNTG KGVLVKLSPG TAPELEVVAH SVFGGDKKFL VESCGDLLMV DKYLSIGPED DLGYNETVEF YEEFDCYMSE RTVKFKVYKL
301: DGDMQRWVEV NCLEDRMLFV GDNCTFSALV SELDSGCKGN CILFSDQFFC STEDDGGFWK HHGIGVFSLE NGRICPINCC RGYAELFWPP PPWICSPRPI
401: DAEMNELKI

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.