Factsheet for Solyc01g111920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047938	Potato	cytosol	96.06	95.35
VIT_03s0038g03630.t01	Wine grape	cytosol, plastid	31.53	43.24
VIT_03s0038g02910.t01	Wine grape	golgi	38.42	41.6
KRH32947	Soybean	endoplasmic reticulum, vacuole	27.09	41.51
CDY67092	Canola	cytosol	40.15	40.05
AT2G17030.1	Thale cress	cytosol	39.9	39.8
VIT_03s0038g02890.t01	Wine grape	cytosol	38.42	33.84
AT2G17036.1	Thale cress	cytosol	33.5	33.66
Solyc11g005160.1.1	Tomato	nucleus	23.89	22.56
Solyc02g083170.2.1	Tomato	nucleus	25.86	21.6

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	InterPro:IPR001810	UniProt:K4B454	PFAM:PF00646	PFAM:PF03478
PANTHER:PTHR13710	PANTHER:PTHR13710:SF83	SMART:SM00256	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc01g111920.2	EnsemblPlants:Solyc01g111920.2.1
UniParc:UPI0002767AB4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:98083996..98086531

Molecular Weight (calculated)

46261.3 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.270

Length

406 amino acids

Sequence
(BLAST)

001: MAEWSQLPRE LVELISKHLS TETDFLRFRS VCSSWRSSLP PKPYPSSLSR FPILPNDGIA ENSWGFKLSK SPLYLIHPPN QTNNHGWIIK LDRENPQRMR
101: LFNPLSRSQC KPLPPDFPKI LDSSQYPIRE LCHEYTLQFI KYRPRASSIA DAGNLYMEKV AVRMEKNGFV LLTIHVSGKL VMFRSGDTKW SIVDESSLPY
201: DDVIMKDENF YAVDNTGKGV LVKLNPGTAP ELQVVAHSVF GGDKKFLVES CGDLLMVDKY LSIGPEDDLG YNETVEFYEE FDCYMSERTV KFKVYKLDGD
301: MQRWVEVNCL EDRMLFVGDN CTFSALVSEL DSGCKGNCIL FSDLFFCSTE DDGGFWKHHG IGVFSLENGS ICPINCCRGY AELFWPPPPW ICSPPTIDAE
401: LNELKI

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.