CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 3
vacuole 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67092	Canola	cytosol	47.17	30.71
AT2G17030.1	Thale cress	cytosol	46.04	29.98
PGSC0003DMT400047938	Potato	cytosol	42.26	27.38
Solyc01g111920.2.1	Tomato	cytosol	41.51	27.09
VIT_03s0038g03630.t01	Wine grape	cytosol, plastid	27.92	25.0
AT2G17036.1	Thale cress	cytosol	37.74	24.75
VIT_03s0038g02910.t01	Wine grape	golgi	33.58	23.73
VIT_03s0038g02890.t01	Wine grape	cytosol	34.72	19.96
KRH69707	Soybean	cytosol	27.55	19.26
KRH07955	Soybean	plastid	10.57	13.08

Protein Annotations

MapMan:35.1	UniProt:A0A0R0HZ15	EMBL:ACUP02006208	ncoils:Coil	InterPro:DUF295	EnsemblPlantsGene:GLYMA_10G088700
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	EnsemblPlants:KRH32947	ProteinID:KRH32947	ProteinID:KRH32947.1	PFAM:PF03478
PANTHER:PTHR13710	PANTHER:PTHR13710:SF83	UniParc:UPI0006ED51F5	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:11820394..11821432

Molecular Weight (calculated)

29628.4 Da

IEP (calculated)

4.503

GRAVY (calculated)

-0.114

Length

265 amino acids

Sequence
(BLAST)

001: MKLPRFALDL FTLPALDLGR EFLLTNTRHT RDSLYIEKLV FLPLTHRKDR FALLTIHVSG KLALFRSGED GWTVIPDMPT PYDDVCVFKG NLYGADSNGR
101: TVRVRPDDGG LTLAAEPVFG GDKKFLVESE GALLLVDMYL SYYSCTQGLF HEDFDEEDVA GMGWERTVKF DVFRLDEEGK KWVELTDLGE RVLFLGDDCA
201: FSASAKDLNL GRGNCVAFRD DGLGFNRVLN GMGVFRLDDG KISPLSECAG FSELFCPPPD WVGLQ

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.