CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69707	Soybean	cytosol	78.97	44.59
AT2G26160.1	Thale cress	cytosol	25.23	16.31
PGSC0003DMT400003919	Potato	cytosol	31.31	13.87
PGSC0003DMT400015519	Potato	cytosol	26.17	13.56
AT1G44080.1	Thale cress	nucleus	21.5	13.26
Solyc02g083170.2.1	Tomato	nucleus	29.91	13.17
PGSC0003DMT400015473	Potato	cytosol	25.23	12.77
CDY64038	Canola	cytosol	20.56	12.72
AT1G65770.1	Thale cress	plastid	21.03	12.5
Bra010521.1-P	Field mustard	cytosol	20.56	12.36
AT3G25750.2	Thale cress	cytosol	20.56	12.15
PGSC0003DMT400015466	Potato	cytosol	24.3	12.04
AT4G35733.1	Thale cress	cytosol	20.09	12.01
CDY41638	Canola	cytosol	19.63	11.97
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	23.36	11.88
AT1G65740.1	Thale cress	cytosol	19.16	11.05
Solyc11g005160.1.1	Tomato	nucleus	21.96	10.93
KRH32947	Soybean	endoplasmic reticulum, vacuole	13.08	10.57
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	16.36	9.67
AT1G57906.1	Thale cress	cytosol	9.81	9.21
PGSC0003DMT400015516	Potato	cytosol	7.01	5.43
PGSC0003DMT400015469	Potato	cytosol	9.35	4.5
PGSC0003DMT400015524	Potato	cytosol	3.74	4.47
PGSC0003DMT400015444	Potato	cytosol	0.93	0.88

Protein Annotations

EntrezGene:102664929	MapMan:35.2	EMBL:ACUP02010128	EnsemblPlantsGene:GLYMA_16G120700	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140
UniProt:K7MGU6	EnsemblPlants:KRH07955	ProteinID:KRH07955	ProteinID:KRH07955.1	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86
UniParc:UPI00023D73EF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:26885540..26886184

Molecular Weight (calculated)

24106.7 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.192

Length

214 amino acids

Sequence
(BLAST)

001: MDVVRFHSVC GSCRSSIPPS LPNSPSFPMQ IPHPSNHSIE TLLNQATVYV IEPTDANGAS NLEPLAISTK WRLIKVEESK NHNHNHNHPL TLLSPISDRK
101: ILYPHGSNSP MLWNLLDFRV TELCKSYTPN ISSATVSKVV FFPNSPWIGA EDSVACCIFL EGKLGFMKHG DEKWNLVDNE NFFYDDVIVF KGQFYVTDKW
201: GTISWIDTSS LKLV

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.