Factsheet for PGSC0003DMT400015519

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015466	Potato	cytosol	87.65	83.8
PGSC0003DMT400015524	Potato	cytosol	32.45	74.86
PGSC0003DMT400015473	Potato	cytosol	63.68	62.17
PGSC0003DMT400015516	Potato	cytosol	40.68	60.87
PGSC0003DMT400015444	Potato	cytosol	32.45	59.29
Solyc11g005160.1.1	Tomato	nucleus	58.35	56.05
PGSC0003DMT400015469	Potato	cytosol	44.31	41.22
PGSC0003DMT400003919	Potato	cytosol	45.28	38.72
KRH69707	Soybean	cytosol	25.67	27.97
KRH07955	Soybean	plastid	13.56	26.17
PGSC0003DMT400047938	Potato	cytosol	25.91	26.16
CDY64038	Canola	cytosol	18.89	22.54
AT1G65770.1	Thale cress	plastid	19.61	22.5
AT2G26160.1	Thale cress	cytosol	17.92	22.36
CDY41638	Canola	cytosol	18.89	22.22
AT1G44080.1	Thale cress	nucleus	18.64	22.19
Bra010521.1-P	Field mustard	cytosol	18.89	21.91
AT3G25750.2	Thale cress	cytosol	18.89	21.55
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	18.64	21.27
AT4G35733.1	Thale cress	cytosol	18.4	21.23
AT1G65740.1	Thale cress	cytosol	18.16	20.22
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	19.13	18.76
AT1G57906.1	Thale cress	cytosol	9.44	17.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400015519	EnsemblPlantsGene:PGSC0003DMG400006059	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86
PFAM:PF03478	PGSC:PGSC0003DMG400006059	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000294CD47
UniProt:M1A657	MapMan:35.1	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006059]

Coordinates

chr11:+:8147302..8148543

Molecular Weight (calculated)

47379.0 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.139

Length

413 amino acids

Sequence
(BLAST)

001: MAPWSDLPKE LVERISKFVN SNIDVLRIRA VCSSWRSAFS PNFKIPKSQF PIKLPINPHC YLIECTVYLF QLPHPPHTGW LVKILKTSNG KLKIFNPLTN
101: RVIDDLPDKK LNLLDIRVSQ VCKFYHVHCV LNCHPYAGWG IFKKILPICN DQTTHFSVMA INVLDHLLCF KSGDEKWTTL KDLTLSKIVD ISVYKGNFYV
201: VDTFGETIMY DPFSFNETNV SSTVKILSSS LFNEWGSKKR LVESDGKLFL VDMFLDTDVK TELQGSGPSR NNPMEIKIYW LDEEQHEWIA VHTLGDRIFF
301: AGDDCCFSVS SSDFGDQCRG NCIYYKNGDI IVDISGNDLS EEVKLRYKGL HDQLTGIITL QDGKLGSLSS FREYADIFWP TPFWLLTDDQ ASSKMFSPRM
401: LPFLFDTRHV RSC

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.