Factsheet for Bra010521.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64038	Canola	cytosol	96.35	99.13
AT4G35733.1	Thale cress	cytosol	57.02	56.7
KRH69707	Soybean	cytosol	26.97	25.33
PGSC0003DMT400015524	Potato	cytosol	11.8	23.46
KRH07955	Soybean	plastid	12.36	20.56
PGSC0003DMT400015466	Potato	cytosol	23.03	18.98
PGSC0003DMT400015519	Potato	cytosol	21.91	18.89
PGSC0003DMT400015444	Potato	cytosol	11.8	18.58
Solyc11g005160.1.1	Tomato	nucleus	22.19	18.37
PGSC0003DMT400015516	Potato	cytosol	14.04	18.12
Bra006681.1-P	Field mustard	cytosol	17.98	17.44
PGSC0003DMT400015473	Potato	cytosol	19.94	16.78
Solyc02g083170.2.1	Tomato	nucleus	22.47	16.46
PGSC0003DMT400003919	Potato	cytosol	22.19	16.36
PGSC0003DMT400015469	Potato	cytosol	16.85	13.51

Protein Annotations

EnsemblPlants:Bra010521.1	EnsemblPlants:Bra010521.1-P	EnsemblPlantsGene:Bra010521	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710	PANTHER:PTHR13710:SF83
PFAM:PF03478	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002545E25	UniProt:M4D221	MapMan:35.1

Description

AT4G35733 (E=2e-120) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box protein-related / C-type lectin-related (TAIR:AT1G44080.1); Has 92 Blast hits to 87 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA08:-:14969023..14970093

Molecular Weight (calculated)

41485.6 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.254

Length

356 amino acids

Sequence
(BLAST)

001: MSKSVEWSGL PEELVDEIAG RLFSKVELHR VRSICKPWRS ASSIHKRYPK RHDRNRVRVL SPLSNINSCL LSPAAFFRVF LSSCRNKGWL IKTQDVSETR
101: KKLLHPLSRV PMDSSQQTLD LLEYTVTEIH QSYDVTKSIS YNFARVVLMD KFVFGVNDKK EIWWCNSEES NDGSNNVWTR VSDEEAEYFS DIIVHKGQIY
201: ALDLNSAIWW ISLSELKIFQ YGPSTPMDYY EFDDCKDKRL VEFCGELCII HRFCKTFRVR RVNVERTIGF KVYKMDMELV EWVEVKSLGD NAFVMATDSC
301: FSVVASDYYG CLEDAIYFTE KKDVNNVSVF KLGQGCVTKL VESFENCFHM FYPPFV

Best Arabidopsis Sequence Match ( AT4G35733.1 )
(BLAST)

001: MSEATVWSDL PGELLDHIAN GLFSKVELLR FRSICKTFRS AVDSDKNFLD HLKRNRRRLL SPYSTGKTCS LSPAAFYRVV LSSYPDKGWL IKLQDAYVSS
101: QKQLLSPLSR FSIKSSGKTL DLLEFTVSEI HQSYDVEYLY YNSTRASFNF ARVVLAEDFV FIVDNYKKIW LCNSNESDSH WVRIMDEEVK LFSDIVFHKG
201: YMYALDLTGA VWWISLSEFG IFQFGPSSTP MDYCDIDECK DKRFVEYCGD LCIVHRFSRK FRIKRVDIDM TVGFKVYKMD EELVEYVEVK SLGDKAFVMA
301: TDSCFSVLAR EYYGCLENSI YFTEQNNVKV FKLGDGSITN MVDSSFQSCF QMLIPPLV

Arabidopsis Description

F-box protein At4g35733 [Source:UniProtKB/Swiss-Prot;Acc:B3H6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.