Factsheet for PGSC0003DMT400015473

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015524	Potato	cytosol	30.02	70.95
PGSC0003DMT400015519	Potato	cytosol	62.17	63.68
PGSC0003DMT400015516	Potato	cytosol	41.13	63.04
PGSC0003DMT400015466	Potato	cytosol	62.65	61.34
PGSC0003DMT400015444	Potato	cytosol	32.39	60.62
PGSC0003DMT400015469	Potato	cytosol	46.34	44.14
PGSC0003DMT400003919	Potato	cytosol	41.84	36.65
KRH69707	Soybean	cytosol	24.82	27.7
KRH07955	Soybean	plastid	12.77	25.23
PGSC0003DMT400047938	Potato	cytosol	22.7	23.47
AT2G26160.1	Thale cress	cytosol	17.26	22.05
AT1G65770.1	Thale cress	plastid	17.97	21.11
CDY64038	Canola	cytosol	16.78	20.52
CDY41638	Canola	cytosol	17.02	20.51
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	17.49	20.44
AT3G25750.2	Thale cress	cytosol	17.26	20.17
Bra010521.1-P	Field mustard	cytosol	16.78	19.94
AT1G44080.1	Thale cress	nucleus	16.31	19.88
AT4G35733.1	Thale cress	cytosol	16.31	19.27
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	18.91	19.0
AT1G57906.1	Thale cress	cytosol	9.93	18.42
AT1G65740.1	Thale cress	cytosol	15.84	18.06

Protein Annotations

EnsemblPlants:PGSC0003DMT400015473	EnsemblPlantsGene:PGSC0003DMG400006040	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86
PFAM:PF00646	PFAM:PF03478	PGSC:PGSC0003DMG400006040	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI0002960605	UniProt:M1A633	MapMan:35.1	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006040]

Coordinates

chr11:-:7930688..7931959

Molecular Weight (calculated)

48133.6 Da

IEP (calculated)

6.137

GRAVY (calculated)

-0.123

Length

423 amino acids

Sequence
(BLAST)

001: MASWSDLPKE IVEKISESLD SHIDITRFRA VCNSWRSAIS PNFKISKSLF PIKLPLPKIT MTEDFHKESE FYLIESTVYL LQLPHPPHTP WLVKVVKTVD
101: GKLRILNLLT NTVFKGFPDK KLNSLDFRLS QVFKSYHVQW ILKPYARECE LQVLVSKILL IWNDQTNDFS LMAISIWDHL LCFKSGDEKW TALKDRSAKI
201: VDIIVYKGDF YAVDTYGETI MYDPSSFNET NVSSNVKGLS SSIFNGWGSK KRLVESGGEL FLVDMFLDTD VKAELHGSQP SWKSPKEIKI YQLDEEQHQW
301: IAVHTLGDRI FFAGDDCCFS VSSSDFGDQC SGNCIYYVNG GIVVNILGND LSEEVKLRYK GLHGQHTGII TLQDGKLGSL ISFLEYADIF WPPSSWLYTG
401: DRAALQTLFT NFTPQNLPFL SGI

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.