Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65735.1 | Thale cress | cytosol | 9.8 | 53.12 |
| AT2G26160.1 | Thale cress | cytosol | 50.43 | 52.87 |
| AT4G35733.1 | Thale cress | cytosol | 49.57 | 48.04 |
| AT3G25750.2 | Thale cress | cytosol | 47.26 | 45.3 |
| AT1G65770.1 | Thale cress | plastid | 37.46 | 36.11 |
| AT2G17690.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 37.18 | 30.64 |
| AT1G65740.1 | Thale cress | cytosol | 32.28 | 30.19 |
| AT1G65760.1 | Thale cress | cytosol, golgi, plasma membrane | 30.26 | 29.01 |
| KRH69707 | Soybean | cytosol | 27.95 | 25.59 |
| AT1G57906.1 | Thale cress | cytosol | 15.56 | 23.68 |
| KRH07955 | Soybean | plastid | 13.26 | 21.5 |
| AT2G17030.1 | Thale cress | cytosol | 22.77 | 19.41 |
| AT5G60060.1 | Thale cress | cytosol | 20.46 | 18.98 |
| PGSC0003DMT400015519 | Potato | cytosol | 22.19 | 18.64 |
| PGSC0003DMT400015466 | Potato | cytosol | 22.19 | 17.82 |
| AT2G17036.1 | Thale cress | cytosol | 20.17 | 17.33 |
| PGSC0003DMT400015524 | Potato | cytosol | 8.93 | 17.32 |
| Solyc11g005160.1.1 | Tomato | nucleus | 21.33 | 17.21 |
| Solyc02g083170.2.1 | Tomato | nucleus | 23.92 | 17.08 |
| PGSC0003DMT400003919 | Potato | cytosol | 23.63 | 16.98 |
| PGSC0003DMT400015516 | Potato | cytosol | 13.26 | 16.67 |
| PGSC0003DMT400015473 | Potato | cytosol | 19.88 | 16.31 |
| PGSC0003DMT400015444 | Potato | cytosol | 10.37 | 15.93 |
| PGSC0003DMT400015469 | Potato | cytosol | 16.71 | 13.06 |
Protein Annotations
| ArrayExpress:AT1G44080 | EnsemblPlants:AT1G44080.1 | EnsemblPlantsGene:AT1G44080 | EntrezGene:841010 | InterPro:DUF295 | PANTHER:PTHR13710 |
| PANTHER:PTHR13710:SF83 | PFAM:PF03478 | ProteinID:AAF79674.1 | ProteinID:AAG50551.1 | ProteinID:AEE32016.1 | ProteinID:OAP18108.1 |
| RefSeq:AT1G44080 | RefSeq:AT1G44080-TAIR-G | RefSeq:NP_175073.1 | SEG:seg | TAIR:AT1G44080 | TAIR:AT1G44080.1 |
| Unigene:At.52028 | UniParc:UPI00000A39AC | UniProt:A0A178WIA7 | UniProt:Q9C6X9 | MapMan:35.1 | : |
Description
Probable F-box protein At1g44080 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6X9]
Coordinates
chr1:-:16753944..16755670
Molecular Weight (calculated)
40112.2 Da
IEP (calculated)
8.312
GRAVY (calculated)
-0.196
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKVGWSDLH EDLIDLLANN LSSNINLLRF RSICKPWRST VATKKRLHNH FERNLPTFKK KKTVVSPSTF FRVTLPSPCR NKGWLIKNRQ VSESSKNNLL
101: SPLSGKTITP SDKTLDLLKV ECFRDSSILQ LFADSDRVVF LDNVFFVVDF KNEIWCCKSG EETRHWTRIN NEEAKGFLDI ILHKGKIYAL DLTGAIWWIS
201: LSELSIYQYG PSTPVDFYEI DNCKEKRLVE YCGELCVVHR FYKKFCVKRV LTERTVCFKV YKMDKNLVEW VEVSSLGDKA LIVATDNCFL VLASEYYGCL
301: ENAIYFNDRE DVSVFKLDDC SIITKQINSS SSSSHQSCFQ MFSTSFF
101: SPLSGKTITP SDKTLDLLKV ECFRDSSILQ LFADSDRVVF LDNVFFVVDF KNEIWCCKSG EETRHWTRIN NEEAKGFLDI ILHKGKIYAL DLTGAIWWIS
201: LSELSIYQYG PSTPVDFYEI DNCKEKRLVE YCGELCVVHR FYKKFCVKRV LTERTVCFKV YKMDKNLVEW VEVSSLGDKA LIVATDNCFL VLASEYYGCL
301: ENAIYFNDRE DVSVFKLDDC SIITKQINSS SSSSHQSCFQ MFSTSFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.