Factsheet for PGSC0003DMT400015466

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015519	Potato	cytosol	83.8	87.65
PGSC0003DMT400015524	Potato	cytosol	33.33	80.45
PGSC0003DMT400015473	Potato	cytosol	61.34	62.65
PGSC0003DMT400015516	Potato	cytosol	39.81	62.32
PGSC0003DMT400015444	Potato	cytosol	32.18	61.5
Solyc11g005160.1.1	Tomato	nucleus	56.02	56.28
PGSC0003DMT400015469	Potato	cytosol	43.06	41.89
PGSC0003DMT400003919	Potato	cytosol	43.06	38.51
KRH69707	Soybean	cytosol	24.54	27.97
PGSC0003DMT400047938	Potato	cytosol	23.61	24.94
KRH07955	Soybean	plastid	12.04	24.3
CDY64038	Canola	cytosol	18.75	23.41
Bra010521.1-P	Field mustard	cytosol	18.98	23.03
AT2G26160.1	Thale cress	cytosol	17.36	22.66
AT4G35733.1	Thale cress	cytosol	18.75	22.63
CDY41638	Canola	cytosol	18.29	22.51
AT1G65770.1	Thale cress	plastid	18.52	22.22
AT1G44080.1	Thale cress	nucleus	17.82	22.19
AT3G25750.2	Thale cress	cytosol	18.52	22.1
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	18.29	21.82
AT1G65740.1	Thale cress	cytosol	17.82	20.75
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	19.44	19.95
AT1G57906.1	Thale cress	cytosol	9.26	17.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400015466	EnsemblPlantsGene:PGSC0003DMG400006038	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86
PFAM:PF03478	PGSC:PGSC0003DMG400006038	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00029595D9
UniProt:M1A631	MapMan:35.1	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006038]

Coordinates

chr11:-:7944638..7945936

Molecular Weight (calculated)

49416.3 Da

IEP (calculated)

7.678

GRAVY (calculated)

-0.197

Length

432 amino acids

Sequence
(BLAST)

001: MAPWCDLPIE LVERISKFVN SHIDILRIRA VCSSWRSAFS SNFKIPKSQF PIKLPITSHC YLIECTVYLF QLPHPPHTGW LGKILKTLDG TFMILNPLTK
101: RGIKFVSDAK RLNLLDFRVS QVCKSYHAKL LFKGDLNCHP YAGWGIFKKI LPICNDQTTH FSLMAINVRD HLLCFKSGDD DWTTLKDLTR SKIVDISVYK
201: GNFYAVDTFG ETIMYDPFSF NETNVSSTVK ILSSSLFNKW GSKKRLVESG GELFLVDMFL DTDVKTELQG SGPSRNNPME IKIYRLDEEL HQWIRVHTLG
301: DRIFFAGDDC CFSVSSSDFG DQCRGNCIYY KNGDIIVDIS GNDLSEEVKL RYKGLHDQHT GIITLQDGKL GSLSSFLEYA DIFWPPPSWL FTEDQAASKK
401: FSPRMLPFLF DTSHVSSCQD EKKLDPRHVR SF

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.