Factsheet for Solyc11g005160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015519	Potato	cytosol	56.05	58.35
PGSC0003DMT400015466	Potato	cytosol	56.28	56.02
Solyc02g083170.2.1	Tomato	nucleus	38.37	33.95
KRH69707	Soybean	cytosol	22.56	25.59
Solyc01g111920.2.1	Tomato	cytosol	22.56	23.89
CDY64038	Canola	cytosol	18.37	22.83
CDY41638	Canola	cytosol	18.14	22.22
Bra010521.1-P	Field mustard	cytosol	18.37	22.19
KRH07955	Soybean	plastid	10.93	21.96
AT3G25750.2	Thale cress	cytosol	18.37	21.82
AT1G44080.1	Thale cress	nucleus	17.21	21.33
AT1G65770.1	Thale cress	plastid	17.44	20.83
AT2G26160.1	Thale cress	cytosol	15.81	20.54
AT4G35733.1	Thale cress	cytosol	16.74	20.11
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	16.74	19.89
AT1G65740.1	Thale cress	cytosol	16.98	19.68
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	17.21	17.58
AT1G57906.1	Thale cress	cytosol	9.07	17.11

Protein Annotations

MapMan:35.1	InterPro:DUF295	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0043140	InterPro:IPR001810	UniProt:K4D4C9	PFAM:PF03478	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86
SMART:SM00256	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc11g005160.1	EnsemblPlants:Solyc11g005160.1.1	UniParc:UPI000276979A	:

Description

No Description!

Coordinates

chr11:-:143580..144929

Molecular Weight (calculated)

50184.9 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.235

Length

430 amino acids

Sequence
(BLAST)

001: MAPWCDVPAE LVERISKFVE SHIDILRIRA VCSSWRSTLS PDFKIPKSEF PIKLPYEPPF PHQPMLCTTD FKSHFYLIES SVYLIQLPHP PHTGWLVKIL
101: QTGPGKFKIL NPLTIRVMDN LPDTTKLNFL DFRVSQVCKF YHVHWDLNYY IHCMLGYELF NKALPIWNDQ TNQFSIMATI DHLLCVKSGD NKWTTLKHPT
201: HSKIVDIIVY KGNFYVVDTY GQTIMYDSSL SNDHTIVSST LKVFNEWGTK KRLIESGGEL FLVDIPKEIK VYRLDEQQHE WIAVHTLGDQ IFFAGDDCCF
301: SVSSSNFGDH YCRENCIYYV NGGIIVDRKC YPSKYYAYDF EDHLVSGLSE EVKLRYEGLD GHHTGIFSLR DGKLGSLLSF IEYADIFWPP PSWIFTTDDH
401: QAEFWHFVID DRHVRSFNDT PYMKKVPFHR

Best Arabidopsis Sequence Match ( AT2G17036.1 )
(BLAST)

001: MMDWATLPKD LLDLISKCLE SSFDLIQFRS VCSSWRSAAG PKRLLWAHNL PFFPSDDKPF LSNVILRVAH QSILLIKPNE PQCEADLFGW IVKVWDNIYV
101: SRKMTLLKPL SSSRNYFPQH LPRIFDMSKF TVRELCREVK LYHPDYYCVP GHTALELELG KTVVKYLNDD KFVLLTILEY GKLAVFRSWD REWTVINDYI
201: PSRCQDLIMF DGRFFAIDYN GRTVVVDYSS FKLTLAANPL IGGGDKKFLI ESCGEMFLVD IEFCLNEKPE FTGGFYSYFN ETTVSYKFKF FKLVEREKRW
301: VEVEDLGDKM FFLGDDSTFS ASTADIIPRC VGTGSFVFFY THEESLVVMD DRNLGVFDFR SGKTELVNKL PEYAKLFWPP PPWITTSHES VENYTGETSS
401: QSQS

Arabidopsis Description

F-box protein At2g17036 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.