Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65735.1 | Thale cress | cytosol | 12.22 | 68.75 |
| AT1G65740.1 | Thale cress | cytosol | 48.06 | 46.63 |
| AT1G65760.1 | Thale cress | cytosol, golgi, plasma membrane | 46.67 | 46.41 |
| AT2G17690.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 48.33 | 41.33 |
| AT4G35733.1 | Thale cress | cytosol | 40.56 | 40.78 |
| AT1G44080.1 | Thale cress | nucleus | 36.11 | 37.46 |
| AT2G26160.1 | Thale cress | cytosol | 31.94 | 34.74 |
| AT3G25750.2 | Thale cress | cytosol | 32.78 | 32.6 |
| AT1G57906.1 | Thale cress | cytosol | 19.44 | 30.7 |
| KRH69707 | Soybean | cytosol | 28.06 | 26.65 |
| PGSC0003DMT400015524 | Potato | cytosol | 10.56 | 21.23 |
| KRH07955 | Soybean | plastid | 12.5 | 21.03 |
| AT5G60060.1 | Thale cress | cytosol | 21.67 | 20.86 |
| AT2G17030.1 | Thale cress | cytosol | 22.22 | 19.66 |
| PGSC0003DMT400015519 | Potato | cytosol | 22.5 | 19.61 |
| PGSC0003DMT400015466 | Potato | cytosol | 22.22 | 18.52 |
| PGSC0003DMT400015473 | Potato | cytosol | 21.11 | 17.97 |
| PGSC0003DMT400015444 | Potato | cytosol | 11.11 | 17.7 |
| AT2G17036.1 | Thale cress | cytosol | 19.72 | 17.57 |
| Solyc11g005160.1.1 | Tomato | nucleus | 20.83 | 17.44 |
| PGSC0003DMT400015516 | Potato | cytosol | 13.33 | 17.39 |
| PGSC0003DMT400003919 | Potato | cytosol | 23.06 | 17.18 |
| Solyc02g083170.2.1 | Tomato | nucleus | 23.06 | 17.08 |
| PGSC0003DMT400015469 | Potato | cytosol | 17.78 | 14.41 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:842888 | ProteinID:AAF23838.1 | ProteinID:AEE34421.1 | Symbol:AMR1 |
| ArrayExpress:AT1G65770 | EnsemblPlantsGene:AT1G65770 | RefSeq:AT1G65770 | TAIR:AT1G65770 | RefSeq:AT1G65770-TAIR-G | EnsemblPlants:AT1G65770.1 |
| TAIR:AT1G65770.1 | Unigene:At.66109 | InterPro:DUF295 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:2000083 | RefSeq:NP_176753.1 | PFAM:PF03478 | PANTHER:PTHR13710 |
| PANTHER:PTHR13710:SF83 | UniProt:Q9SHX9 | UniParc:UPI00000A8439 | SEG:seg | : | : |
Description
AMR1Putative F-box protein At1g65770 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHX9]
Coordinates
chr1:-:24460656..24461738
Molecular Weight (calculated)
41590.0 Da
IEP (calculated)
9.212
GRAVY (calculated)
-0.364
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MADWSTLPVD LLNMIAGRLF SNIELKRFRS ICRSWRSSVP GAGKKNPFRT RPLILLNPNP NKPLTDHRRR GEFLSRSAFF RVTLSSSPSQ GWLIKSDVDV
101: SSGKLHLLDP LSRLPMEHSR KRVDLSEFTI TEIREAYQVH DWRTRKETRP IFKRVALVKD KEGDNQVLGI RSTGKMMYWD IKTWKAKEEG YEFSDIIVHK
201: GQTYALDSIG IVYWIRSDLK FIRFGPLVGD WTGDRRLVEC CGEFYIVERL VGESTWKRKA DDTGYEYAKT VGFKVYKFDD EQGKMMEVKS LGDKAFVIAT
301: DTCFSVLAHE FYGCLENAIY FTDDTMIKVF KLDNGNGSSI ETTIYPYAQS CFQMFVPSFL
101: SSGKLHLLDP LSRLPMEHSR KRVDLSEFTI TEIREAYQVH DWRTRKETRP IFKRVALVKD KEGDNQVLGI RSTGKMMYWD IKTWKAKEEG YEFSDIIVHK
201: GQTYALDSIG IVYWIRSDLK FIRFGPLVGD WTGDRRLVEC CGEFYIVERL VGESTWKRKA DDTGYEYAKT VGFKVYKFDD EQGKMMEVKS LGDKAFVIAT
301: DTCFSVLAHE FYGCLENAIY FTDDTMIKVF KLDNGNGSSI ETTIYPYAQS CFQMFVPSFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.