Factsheet for PGSC0003DMT400015516

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015444	Potato	cytosol	77.17	94.25
PGSC0003DMT400015524	Potato	cytosol	45.29	69.83
PGSC0003DMT400015469	Potato	cytosol	76.81	47.75
PGSC0003DMT400015473	Potato	cytosol	63.04	41.13
PGSC0003DMT400015519	Potato	cytosol	60.87	40.68
PGSC0003DMT400015466	Potato	cytosol	62.32	39.81
PGSC0003DMT400003919	Potato	cytosol	42.75	24.43
AT1G57906.1	Thale cress	cytosol	12.68	15.35
KRH69707	Soybean	cytosol	21.01	15.3
PGSC0003DMT400047938	Potato	cytosol	22.46	15.16
CDY64038	Canola	cytosol	18.12	14.45
CDY41638	Canola	cytosol	18.12	14.24
Bra010521.1-P	Field mustard	cytosol	18.12	14.04
AT4G35733.1	Thale cress	cytosol	17.39	13.41
AT1G65770.1	Thale cress	plastid	17.39	13.33
AT2G26160.1	Thale cress	cytosol	15.94	13.29
AT1G44080.1	Thale cress	nucleus	16.67	13.26
AT3G25750.2	Thale cress	cytosol	17.03	12.98
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	16.67	12.71
AT1G65740.1	Thale cress	cytosol	15.94	11.86
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	16.67	10.93
KRH07955	Soybean	plastid	5.43	7.01

Protein Annotations

EnsemblPlants:PGSC0003DMT400015516	EnsemblPlantsGene:PGSC0003DMG400006057	InterPro:DUF295	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86	PFAM:PF03478
PGSC:PGSC0003DMG400006057	SEG:seg	UniParc:UPI00029580EE	UniProt:M1A655	MapMan:35.1	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006057]

Coordinates

chr11:+:8171293..8174500

Molecular Weight (calculated)

32307.1 Da

IEP (calculated)

5.224

GRAVY (calculated)

-0.440

Length

276 amino acids

Sequence
(BLAST)

001: MATSIFDHLL CFKSEDEKWT TLKDPTSKIV DISVYKGNFY AVDTYGETIM YDPLFNQTIV SSTVKIFNEW GSKKRLVESR GELFLVDMFL DTDVKTELHG
101: SQPSWKCPKE IKVYRLDEEQ HEWIAVHTLG DQIFFAGDDC CFSVSSSDFG DQCRGNCIYY VNGGIIVNMS RRPPKYYDYD FEDYLVRGLS EEVKLRYKGL
201: HRHHTGIFSL QDGKLGSLLS FLEYADIFWP PPSWLFTDDD EAASKEFWHF VIDDRHVRSV NDRPVMKKVW FKREQP

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.