Factsheet for PGSC0003DMT400003919

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083170.2.1	Tomato	nucleus	85.3	84.77
PGSC0003DMT400015524	Potato	cytosol	18.43	49.72
PGSC0003DMT400015519	Potato	cytosol	38.72	45.28
PGSC0003DMT400015466	Potato	cytosol	38.51	43.06
PGSC0003DMT400015516	Potato	cytosol	24.43	42.75
PGSC0003DMT400015473	Potato	cytosol	36.65	41.84
PGSC0003DMT400015444	Potato	cytosol	17.81	38.05
KRH07955	Soybean	plastid	13.87	31.31
KRH69707	Soybean	cytosol	24.02	30.61
PGSC0003DMT400015469	Potato	cytosol	26.92	29.28
PGSC0003DMT400047938	Potato	cytosol	22.15	26.16
AT4G35733.1	Thale cress	cytosol	18.43	24.86
AT2G26160.1	Thale cress	cytosol	16.77	24.47
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	18.01	24.03
AT1G44080.1	Thale cress	nucleus	16.98	23.63
AT1G65740.1	Thale cress	cytosol	17.81	23.18
AT1G65770.1	Thale cress	plastid	17.18	23.06
CDY64038	Canola	cytosol	16.15	22.54
CDY41638	Canola	cytosol	16.15	22.22
Bra010521.1-P	Field mustard	cytosol	16.36	22.19
AT3G25750.2	Thale cress	cytosol	16.36	21.82
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	16.77	19.24
AT1G57906.1	Thale cress	cytosol	8.9	18.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400003919	EnsemblPlantsGene:PGSC0003DMG400001546	EntrezGene:102583252	InterPro:DUF295	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86
PFAM:PF03478	PGSC:PGSC0003DMG400001546	RefSeq:XP_006340801.1	SEG:seg	UniParc:UPI00029517C9	UniProt:M0ZMJ3
MapMan:35.1	:	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001546]

Coordinates

chr2:+:38870775..38872763

Molecular Weight (calculated)

54627.2 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.455

Length

483 amino acids

Sequence
(BLAST)

001: MEQQTVGSGR YVPWSDIPKE LAERIGSCLD TQIDVLHFRS VCTTWRSSLA PFKTVPHFPV EIPFPLDDRN IYKGRPGYYL IESTVYILQP LDGDSIDSPC
101: KGWLIQVIKT ADGKLKVLNP LTGREIQNHM PKVLNLLDFR VSQVCKSYHV QYYIPSKPLF RDYDVGYVRK VLLLMNHNSG SEKDSFSLMA IDRDNRLCYL
201: KSGDDKWTKL KNPSSYIDDI IVYKGNFYVV DRYGETMKFD SSFNETTVAS RFSGGGKRKK RLVESGGQLF LVDYSSDFGK DASREIKIYR LDEKQYEWIE
301: VHTLGDRIFF AVNDCCFSVS SCDFGDKYGR GNCIYYVKGS MYFDDEDSDD DFGMCGCCCP LDDDDVISYP ISNYDDKTNE SGSKSGGGGV ISTSISNGDH
401: RINASTSKSG GVREEQAVDR YKGVFDDNTC VFTIEDGKLG SLLSFLDYAE ILWPPPSWLK GEDQPHPHVH EIAESLLSIN KQG

Best Arabidopsis Sequence Match ( AT2G17036.1 )
(BLAST)

001: MMDWATLPKD LLDLISKCLE SSFDLIQFRS VCSSWRSAAG PKRLLWAHNL PFFPSDDKPF LSNVILRVAH QSILLIKPNE PQCEADLFGW IVKVWDNIYV
101: SRKMTLLKPL SSSRNYFPQH LPRIFDMSKF TVRELCREVK LYHPDYYCVP GHTALELELG KTVVKYLNDD KFVLLTILEY GKLAVFRSWD REWTVINDYI
201: PSRCQDLIMF DGRFFAIDYN GRTVVVDYSS FKLTLAANPL IGGGDKKFLI ESCGEMFLVD IEFCLNEKPE FTGGFYSYFN ETTVSYKFKF FKLVEREKRW
301: VEVEDLGDKM FFLGDDSTFS ASTADIIPRC VGTGSFVFFY THEESLVVMD DRNLGVFDFR SGKTELVNKL PEYAKLFWPP PPWITTSHES VENYTGETSS
401: QSQS

Arabidopsis Description

F-box protein At2g17036 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.