Factsheet for PGSC0003DMT400015524

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015444	Potato	cytosol	68.72	54.42
PGSC0003DMT400015516	Potato	cytosol	69.83	45.29
PGSC0003DMT400015466	Potato	cytosol	80.45	33.33
PGSC0003DMT400015519	Potato	cytosol	74.86	32.45
PGSC0003DMT400015473	Potato	cytosol	70.95	30.02
PGSC0003DMT400015469	Potato	cytosol	65.92	26.58
PGSC0003DMT400003919	Potato	cytosol	49.72	18.43
KRH69707	Soybean	cytosol	26.82	12.66
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	24.58	12.15
CDY64038	Canola	cytosol	23.46	12.14
CDY41638	Canola	cytosol	23.46	11.97
AT1G57906.1	Thale cress	cytosol	15.08	11.84
Bra010521.1-P	Field mustard	cytosol	23.46	11.8
PGSC0003DMT400047938	Potato	cytosol	25.7	11.25
AT4G35733.1	Thale cress	cytosol	21.79	10.89
AT1G65770.1	Thale cress	plastid	21.23	10.56
AT1G65740.1	Thale cress	cytosol	21.23	10.24
AT3G25750.2	Thale cress	cytosol	20.11	9.94
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	22.35	9.5
AT2G26160.1	Thale cress	cytosol	17.32	9.37
AT1G44080.1	Thale cress	nucleus	17.32	8.93
KRH07955	Soybean	plastid	4.47	3.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400015524	EnsemblPlantsGene:PGSC0003DMG400006060	EntrezGene:107061291	InterPro:DUF295	PANTHER:PTHR13710	PANTHER:PTHR13710:SF86
PFAM:PF03478	PGSC:PGSC0003DMG400006060	RefSeq:XP_015165800.1	SEG:seg	UniParc:UPI000296CD9B	UniProt:M1A658
MapMan:35.2	:	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006060]

Coordinates

chr11:+:8135910..8137313

Molecular Weight (calculated)

20475.1 Da

IEP (calculated)

4.537

GRAVY (calculated)

-0.327

Length

179 amino acids

Sequence
(BLAST)

001: MYDPFSFNEI NVSSTVKILS SSLFNEWGSK KRLVETGGEL FLVDMFLDTD VKTELQGSGP SRNNPMEIKI YRLDEELHQW IRVHTLGDRI FFAGDDCCFS
101: VSSSDFGDQC RGNCIYYKNG DIIVDISGND LSEEVKLRYK GLHDQHTGII TLQDGKLGSL SSFREYADIF WPPPSWLFY

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.