CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07955	Soybean	plastid	44.59	78.97
AT2G26160.1	Thale cress	cytosol	26.12	29.91
AT1G65770.1	Thale cress	plastid	26.65	28.06
AT1G44080.1	Thale cress	nucleus	25.59	27.95
CDY64038	Canola	cytosol	25.33	27.75
KRH32947	Soybean	endoplasmic reticulum, vacuole	19.26	27.55
AT4G35733.1	Thale cress	cytosol	25.86	27.37
CDY41638	Canola	cytosol	25.33	27.35
Bra010521.1-P	Field mustard	cytosol	25.33	26.97
PGSC0003DMT400015524	Potato	cytosol	12.66	26.82
PGSC0003DMT400015519	Potato	cytosol	27.97	25.67
AT3G25750.2	Thale cress	cytosol	24.01	25.14
AT2G17690.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	27.7	24.94
AT1G65760.1	Thale cress	cytosol, golgi, plasma membrane	23.75	24.86
PGSC0003DMT400015473	Potato	cytosol	27.7	24.82
AT1G57906.1	Thale cress	cytosol	14.78	24.56
PGSC0003DMT400015466	Potato	cytosol	27.97	24.54
PGSC0003DMT400003919	Potato	cytosol	30.61	24.02
AT1G65740.1	Thale cress	cytosol	23.22	23.72
Solyc02g083170.2.1	Tomato	nucleus	29.55	23.05
Solyc11g005160.1.1	Tomato	nucleus	25.59	22.56
PGSC0003DMT400015516	Potato	cytosol	15.3	21.01
PGSC0003DMT400015444	Potato	cytosol	11.61	19.47
PGSC0003DMT400015469	Potato	cytosol	19.53	16.67

Protein Annotations

EntrezGene:102666149	MapMan:35.1	EMBL:ACUP02000728	InterPro:DUF295	EnsemblPlantsGene:GLYMA_02G043500	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0043140	UniProt:I1JCC6	EnsemblPlants:KRH69707	ProteinID:KRH69707	ProteinID:KRH69707.1	PFAM:PF03478
PANTHER:PTHR13710	PANTHER:PTHR13710:SF86	UniParc:UPI00023BE796	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:4058112..4060921

Molecular Weight (calculated)

43019.2 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.260

Length

379 amino acids

Sequence
(BLAST)

001: MDGKVDWSEL PIELWPKIGK SLENHMDIVR FRSVCESCRS SMPPPLPNSP SFPMQIPHPL NHSIETLLNQ ATVYVIEPTD ANGASKLEPL PVSSKGWLIK
101: VEESKNHNHN HPLTLLSPIS DRKIVYPHGT NSPVLWNLLE FRVIELCKSY TTNISSAAVS KVVFFPNSPW IGAQDSVACC IFLEGKLGFM KHGDEKWTLV
201: DNKNFFYDDV IVFKGQFYVT DDRGTISWID TSSLKLVQFS PPLCGLGDKK HLVESCGSLY VVDRYYESET SRRRNYVGGR EDRVAAVVCF KVYKLDEEWG
301: KWVDVKNLGD RAFVLGNSCS FSVSAKELTG YQENCIYFTD IFDVRVYNLD DRSIVSIDFD PCIDKSMCSH SSWTRIGRN

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.