Factsheet for VIT_03s0038g02890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 2
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17030.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02910.t01	Wine grape	golgi	69.63	85.6
VIT_03s0038g03630.t01	Wine grape	cytosol, plastid	35.14	54.73
Solyc01g111920.2.1	Tomato	cytosol	33.84	38.42
PGSC0003DMT400047938	Potato	cytosol	33.41	37.65
AT2G17030.1	Thale cress	cytosol	31.45	35.63
CDY67092	Canola	cytosol	30.8	34.89
KRH32947	Soybean	endoplasmic reticulum, vacuole	19.96	34.72
AT2G17036.1	Thale cress	cytosol	27.55	31.44
VIT_00s0338g00010.t01	Wine grape	cytosol	1.08	1.23

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100248766	wikigene:100248766	MapMan:35.1	ProteinID:CCB60595	ProteinID:CCB60595.1
InterPro:DUF295	InterPro:F-box-like_dom_sf	UniProt:F6I0X9	EMBL:FN596508	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0043140	EntrezGene:LOC100248766	wikigene:LOC100248766	PFAM:PF03478	PANTHER:PTHR13710	PANTHER:PTHR13710:SF83
SUPFAM:SSF52833	SUPFAM:SSF81383	InterPro:Thioredoxin-like_sf	UniParc:UPI000210A596	ArrayExpress:VIT_03s0038g02890	EnsemblPlantsGene:VIT_03s0038g02890
EnsemblPlants:VIT_03s0038g02890.t01	RefSeq:XP_002278304	RefSeq:XP_002278304.1	:	:	:

Description

No Description!

Coordinates

chr3:-:2042274..2047495

Molecular Weight (calculated)

51923.8 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.116

Length

461 amino acids

Sequence
(BLAST)

001: MVKCVEDTWV LVKAKTQSRK LQLNSSMARW SQLPKDLLLL IAQRLNSHFD LLCLRSVCSS WHACVPSRLH PLPSRFPILP TNGTSWGLYL SRRTILCLGL
101: PESHCQPTIS SWLIKVEEDV PDMAHLVNPL STFQFKHLPP NFPKTFDFSR FRVSELGQEY VLQYMNHRPS GEADEGSLHK GKVAFSSTGN GEDFVMITIH
201: VSGKLAMFRH GNKRLILIND TPSPCDDLIF FNGEFYAIDN TGRTVVVAIG SPPVLSLIAD SVFGGDKKSL VESNGELLMV DTYFGQGIHR RMKRAVRFKV
301: FKLDQIGHMW VEVESLGNRI LFLGEKSTFS AVASEFCGCE GNCIYYTNTF FCPNGQGDNA YTAIDIFNLE NGNMGPLLSF PDYSKLIGDH DVDHKLIVLD
401: VGLKHCGPCV KVYPTALKLS RQMADNYFCK DERDIESNLR MKFPFPCSFL RFCEGCNMKD G

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.