CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57900.1	CDX68112	AT1G75950.1	12795696
AT5G57900.1	CDX73212	AT1G75950.1	12795696
AT5G57900.1	CDX80590	AT1G75950.1	12795696
AT5G57900.1	CDX85931	AT1G75950.1	12795696
AT5G57900.1	CDX87650	AT1G75950.1	12795696
AT5G57900.1	CDY13521	AT1G75950.1	12795696
AT5G57900.1	CDY39073	AT1G75950.1	12795696
AT5G57900.1	CDX68112	AT1G75950.1	21798944
AT5G57900.1	CDX73212	AT1G75950.1	21798944
AT5G57900.1	CDX80590	AT1G75950.1	21798944
AT5G57900.1	CDX85931	AT1G75950.1	21798944
AT5G57900.1	CDX87650	AT1G75950.1	21798944
AT5G57900.1	CDY13521	AT1G75950.1	21798944
AT5G57900.1	CDY39073	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002686.1-P	Field mustard	cytosol	99.67	99.67
CDY57461	Canola	cytosol	96.67	96.67
AT5G57900.1	Thale cress	cytosol	81.33	81.33
VIT_11s0037g00430.t01	Wine grape	cytosol	60.33	58.77
KRH72322	Soybean	cytosol	55.33	54.25
CDY39233	Canola	cytosol	45.67	49.28
CDX68681	Canola	cytosol	47.67	49.14
CDX72258	Canola	cytosol	46.0	49.11
CDY23249	Canola	cytosol	45.0	49.09
GSMUA_Achr4P20480_001	Banana	cytosol	51.33	49.04
CDY28199	Canola	cytosol	47.0	48.79
PGSC0003DMT400028954	Potato	cytosol	50.0	48.7
Solyc07g005750.2.1	Tomato	cytosol	50.33	48.4
CDY39231	Canola	cytosol	34.67	48.15
CDY55615	Canola	cytosol	38.67	47.93
CDY39226	Canola	cytosol	42.67	45.88
CDX72257	Canola	cytosol	42.33	45.52
TraesCS1B01G073600.1	Wheat	cytosol	47.0	45.19
TraesCS1D01G057200.3	Wheat	cytosol	46.67	44.73
Zm00001d050166_P001	Maize	cytosol, extracellular	45.67	43.35
EES14834	Sorghum	cytosol	45.0	42.72
CDX72259	Canola	cytosol	29.67	42.58
TraesCS1A01G056500.2	Wheat	cytosol	47.0	40.17
CDX68676	Canola	mitochondrion	18.0	40.0
HORVU1Hr1G011370.2	Barley	cytosol	48.0	39.13
CDX68675	Canola	cytosol	20.67	36.9
CDY49309	Canola	cytosol	30.33	35.55
CDY39232	Canola	cytosol	2.67	33.33
Os08t0269800-01	Rice	cytosol	16.67	32.26
CDY13002	Canola	nucleus	20.0	23.72
CDY05035	Canola	cytosol	24.67	23.27
CDX90703	Canola	cytosol	24.67	23.27
CDY51578	Canola	cytosol	21.67	22.57
CDX75124	Canola	cytosol	21.0	22.11

Protein Annotations

EnsemblPlants:CDY51272	EnsemblPlantsGene:GSBRNA2T00003066001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44841	PFAM:PF13516	ProteinID:CDY51272	ProteinID:CDY51272.1	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EEC70A	UniProt:A0A078IMX3	MapMan:19.2.2.8.1.4.1	:	:

Description

BnaA10g11760DBnaA10g11760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMX3]

Coordinates

chrLK032981:+:24192..26975

Molecular Weight (calculated)

34395.1 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.330

Length

300 amino acids

Sequence
(BLAST)

001: MDDWGGLAPE ILTNIISRLT IQERWTGPMF VRKSWLAVCR DPYLWSSFDL EPWFESYPES TQWWSPDFER KIDSMLRSVV DWSDGGLTEI RVRHCSDHAL
101: SYAAERCPIL EALAVRSSPH VTDASMAKVA FRCRSLKELD ISYCHEISHD ALVMIGRNCP NLTTLKRNLM DWSDSSRHIG SVVPTEYIGA CPQDGDREAE
201: AIGKHMMNLE RLEIQFSRLS AKGLASVCEG CMKLEYLDLF GCVHLSSRDI ANNVSRLKGI KEVKKPDVYV PRSGPVVAQT ERYGHWRLYD ERFDIQSMRI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.