CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024054.1-P	Field mustard	cytosol	99.28	99.28
CDX72258	Canola	cytosol	93.88	92.88
CDX72259	Canola	cytosol	47.12	62.68
CDY39226	Canola	cytosol	61.51	61.29
CDY39231	Canola	cytosol	47.48	61.11
CDX72257	Canola	cytosol	60.43	60.22
CDX68681	Canola	cytosol	56.83	54.3
CDY28199	Canola	cytosol	53.96	51.9
CDY23249	Canola	cytosol	51.08	51.64
CDY55615	Canola	cytosol	43.88	50.41
CDX68676	Canola	mitochondrion	24.1	49.63
CDX68675	Canola	cytosol	28.42	47.02
CDY57461	Canola	cytosol	49.64	46.0
CDY51272	Canola	cytosol	49.28	45.67
VIT_11s0037g00430.t01	Wine grape	cytosol	49.28	44.48
PGSC0003DMT400028954	Potato	cytosol	46.76	42.21
Solyc07g005750.2.1	Tomato	cytosol	47.12	41.99
KRH72322	Soybean	cytosol	46.04	41.83
CDY49309	Canola	cytosol	35.25	38.28
GSMUA_Achr4P20480_001	Banana	cytosol	42.45	37.58
EES14834	Sorghum	cytosol	38.85	34.18
Zm00001d050166_P001	Maize	cytosol, extracellular	38.85	34.18
TraesCS1B01G073600.1	Wheat	cytosol	37.77	33.65
TraesCS1D01G057200.3	Wheat	cytosol	37.77	33.55
Os08t0269800-01	Rice	cytosol	17.99	32.26
TraesCS1A01G056500.2	Wheat	cytosol	37.05	29.34
HORVU1Hr1G011370.2	Barley	cytosol	37.41	28.26
CDY13002	Canola	nucleus	24.82	27.27
CDY39232	Canola	cytosol	2.16	25.0
CDY51578	Canola	cytosol	20.86	20.14
CDY05035	Canola	cytosol	23.02	20.13
CDX90703	Canola	cytosol	23.02	20.13
CDX75124	Canola	cytosol	20.5	20.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	UniProt:A0A078HR43	EnsemblPlants:CDY39233	ProteinID:CDY39233
ProteinID:CDY39233.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067453001
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516
PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE4A83

Description

BnaA03g50450DBnaA03g50450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR43]

Coordinates

chrLK032443:+:260359..261540

Molecular Weight (calculated)

31512.2 Da

IEP (calculated)

5.179

GRAVY (calculated)

-0.069

Length

278 amino acids

Sequence
(BLAST)

001: MGWELGPDWT ELTQECLLDI FSRLSLEERW TGPMFVCKTW MNGCQDPSLN LVFDLETKFQ SLPGSLSCWW SPEFGDKIDS VLRSVVDRSE GGLKEVRIRH
101: CTDSSISYVA ERCPNLEVLS VKYCPKVTDD SMLKIALMCP NLKELDISFS YKISCVCVDM VGKNCKNIQT FKRNLMDPAE VMKSVPSNYM EDPSIFLIYG
201: NIDAYVIGKH MHQLKHLELR FSTLSDNGLA QLCEGCLNLE YLDLFGCSKL TNDGVTNSIS NLKHLKVIKI PSFPAFTI

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.